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HenrikBengtsson / CBI-software

A Scientific Software Stack for HPC (CentOS oriented)
https://wynton.ucsf.edu/hpc/software/software-repositories.html
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gistic2: Missing libraries on CentOS 7 and Rocky 8 #100

Closed HenrikBengtsson closed 1 year ago

HenrikBengtsson commented 1 year ago

CentOS 7

[dev2]$ make check
...
Detected missing library dependencies in 21 executables: [n=15]
libavcodec.so.52 libavcodec.so.53 libavformat.so.52
libavformat.so.53 libgstapp-0.10.so.0 libgstbase-0.10.so.0
libgstinterfaces-0.10.so.0 libgstreamer-0.10.so.0
libgstvideo-0.10.so.0 libmwsl_solver.so libQtGui.so.4
libQtOpenGL.so.4 libQtSvg.so.4 libQtWebKit.so.4 libudev.so.0

Rocky 8

[devr8]$ make check
...
Detected missing library dependencies in 25 executables: [n=24] 
libavcodec.so.52 libavcodec.so.53 libavformat.so.52libavformat.so.53 libgcrypt.so.11
libgstapp-0.10.so.0 libgstbase-0.10.so.0 libgstinterfaces-0.10.so.0 libgstreamer-0.10.so.0
libgstvideo-0.10.so.0 libmwsl_solver.so libnsl.so.1 libQtCore.so.4 libQtGui.so.4 
libQtNetwork.so.4 libQtOpenGL.so.4 libQtSql.so.4 libQtSvg.so.4 libQtWebKit.so.4
libQtXmlPatterns.so.4 libQtXml.so.4 libudev.so.0 /wynton/home/cbi/shared/software/CBI/gistic2-2.0.23/MATLAB_Compiler_Runtime/v83/bin/glnxa64/../../sys/os/glnxa64/libstdc++.so.6 [version `CXXABI_1.3.8'] /wynton/home/cbi/shared/software/CBI/gistic2-2.0.23/MATLAB_Compiler_Runtime/v83/bin/glnxa64/../../sys/os/glnxa64/libstdc++.so.6 [version `CXXABI_1.3.9']
HenrikBengtsson commented 1 year ago

Installing gistic2 on Rocky 8, gives the same number of missing libraries, which suggests that the installation does not compile anything, but just extracts from the downloaded tarball.

Conclusion: there's nothing more we can down here.