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HenrikBengtsson / CBI-software

A Scientific Software Stack for HPC (CentOS oriented)
https://wynton.ucsf.edu/hpc/software/software-repositories.html
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CentOS 7/Rocky 8: Missing libraries #104

Open HenrikBengtsson opened 1 year ago

HenrikBengtsson commented 1 year ago

The below results are from Wynton HPC on 2023-09-15T10:15 2023-09-14T19:00.

CentOS 7

[dev2]$ grep -E "^# [[].* Detected missing library dependencies" centos7.check-libs.out2

# [cellranger/7.1.0] Detected missing library dependencies in 1 executables: [n=1] libreadline.so.8

# [gistic2/2.0.23] Detected missing library dependencies in 21 executables: [n=15] libavcodec.so.52 libavcodec.so.53 libavformat.so.52 libavformat.so.53 libgstapp-0.10.so.0 libgstbase-0.10.so.0 libgstinterfaces-0.10.so.0 libgstreamer-0.10.so.0 libgstvideo-0.10.so.0 libmwsl_solver.so libQtGui.so.4 libQtOpenGL.so.4 libQtSvg.so.4 libQtWebKit.so.4 libudev.so.0# [rstudio-server/2023.06.1-524] Detected missing library dependencies in 1 executables: [n=1] /lib64/libc.so.6 [version `GLIBC_2.18']

# [sratoolkit/3.0.7] Detected missing library dependencies in 3 executables: [n=2] /lib64/libstdc++.so.6 [version `GLIBCXX_3.4.20'] /lib64/libstdc++.so.6 [version `GLIBCXX_3.4.21']

Rocky 8

[devr8]$ grep -E "^# [[].* Detected missing library dependencies" rocky8.check-libs.out2

# [cellranger/7.1.0] Detected missing library dependencies in 1 executables: [n=1] libreadline.so.8

# [gistic2/2.0.23] Detected missing library dependencies in 25 executables: [n=24] libavcodec.so.52 libavcodec.so.53 libavformat.so.52 libavformat.so.53 libgcrypt.so.11 libgstapp-0.10.so.0 libgstbase-0.10.so.0 libgstinterfaces-0.10.so.0 libgstreamer-0.10.so.0 libgstvideo-0.10.so.0 libmwsl_solver.so libnsl.so.1 libQtCore.so.4 libQtGui.so.4 libQtNetwork.so.4 libQtOpenGL.so.4 libQtSql.so.4 libQtSvg.so.4 libQtWebKit.so.4 libQtXmlPatterns.so.4 libQtXml.so.4 libudev.so.0 /wynton/home/cbi/shared/software/CBI/gistic2-2.0.23/MATLAB_Compiler_Runtime/v83/bin/glnxa64/../../sys/os/glnxa64/libstdc++.so.6 [version `CXXABI_1.3.8'] /wynton/home/cbi/shared/software/CBI/gistic2-2.0.23/MATLAB_Compiler_Runtime/v83/bin/glnxa64/../../sys/os/glnxa64/libstdc++.so.6 [version `CXXABI_1.3.9']

Update 2023-09-15: miniconda3 is now all OK on Rocky 8 too.

HenrikBengtsson commented 1 year ago

I've scanned all miniconda3 versions for missing libraries on CentOS 7 and Rocky 8. All OK.