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HenrikBengtsson / CBI-software

A Scientific Software Stack for HPC (CentOS oriented)
https://wynton.ucsf.edu/hpc/software/software-repositories.html
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Software tools that install absolute paths (n=15) #106

Open HenrikBengtsson opened 1 year ago

HenrikBengtsson commented 1 year ago

R does this. Conda too.

HenrikBengtsson commented 1 year ago

Running the following on Wynton:

[dev1]$ make check-absolute-paths/ALL 2>1 | tee absolute-paths.log

reveals:

$ grep -F "Detected absolute paths in executables" absolute-paths.log | grep -vF "MODULE_NAME" | sed -E 's/(^# |Detected absolute paths in executables: )//g' | cat                                                                                                           
[bcftools/1.18] [n=1] $PREFIX/bin/bcftools

[byobu/5.133] [n=30] $PREFIX/bin/byobu $PREFIX/bin/byobu-config $PREFIX/bin/byobu-ctrl-a $PREFIX/bin/byobu-disable $PREFIX/bin/byobu-disable-prompt $PREFIX/bin/byobu-enable $PREFIX/bin/byobu-export $PREFIX/bin/byobu-janitor $PREFIX/bin/byobu-launch $PREFIX/bin/byobu-launcher-install $PREFIX/bin/byobu-launcher-uninstall $PREFIX/bin/byobu-layout $PREFIX/bin/byobu-quiet $PREFIX/bin/byobu-reconnect-sockets $PREFIX/bin/byobu-select-profile $PREFIX/bin/byobu-status $PREFIX/bin/byobu-ugraph $PREFIX/bin/byobu-enable-prompt $PREFIX/bin/byobu-launcher $PREFIX/bin/byobu-prompt $PREFIX/bin/byobu-select-backend $PREFIX/bin/byobu-select-session $PREFIX/bin/byobu-status-detail $PREFIX/bin/byobu-ulevel $PREFIX/bin/byobu-silent $PREFIX/bin/byobu-shell $PREFIX/lib/byobu/include/config.py $PREFIX/lib/byobu/include/dirs $PREFIX/lib/byobu/include/toggle-utf8 $PREFIX/share/byobu/tests/byobu-time-notifications

[cutadapt/4.4] [n=4] $PREFIX/venv/bin/wheel $PREFIX/venv/bin/wheel3.8 $PREFIX/venv/bin/wheel-3.8 $PREFIX/venv/bin/wheel3

[geos/3.9.4] [n=4] $PREFIX/lib/libgeos.la $PREFIX/lib/libgeos_c.so.1.14.4 $PREFIX/lib/libgeos_c.la $PREFIX/bin/geos-config

[gsl/2.7] [n=5] $PREFIX/lib/libgslcblas.la $PREFIX/lib/libgsl.la $PREFIX/bin/gsl-randist $PREFIX/bin/gsl-histogram $PREFIX/bin/gsl-config

[hdf5/1.12.2] [n=25] $PREFIX/lib/libhdf5.so.200.2.0 $PREFIX/lib/libhdf5.la $PREFIX/lib/libhdf5_hl.so.200.1.0 $PREFIX/lib/libhdf5_hl.la $PREFIX/bin/h5cc $PREFIX/bin/h5diff $PREFIX/bin/h5ls $PREFIX/bin/h5dump $PREFIX/bin/h5debug $PREFIX/bin/h5repart $PREFIX/bin/h5mkgrp $PREFIX/bin/h5clear $PREFIX/bin/h5import $PREFIX/bin/h5repack $PREFIX/bin/h5jam $PREFIX/bin/h5unjam $PREFIX/bin/h5copy $PREFIX/bin/h5format_convert $PREFIX/bin/h5stat $PREFIX/bin/h5perf_serial $PREFIX/bin/gif2h5 $PREFIX/bin/h52gif $PREFIX/bin/h5watch $PREFIX/share/hdf5_examples/c/run-c-ex.sh $PREFIX/share/hdf5_examples/hl/c/run-hlc-ex.sh

[htop/3.2.2] [n=1] $PREFIX/bin/htop

[jags/4.3.1] [n=18] $PREFIX/lib/libjags.la $PREFIX/lib/libjrmath.la $PREFIX/lib/JAGS/modules-4/basemod.so $PREFIX/lib/JAGS/modules-4/basemod.la $PREFIX/lib/JAGS/modules-4/bugs.so $PREFIX/lib/JAGS/modules-4/bugs.la $PREFIX/lib/JAGS/modules-4/msm.so $PREFIX/lib/JAGS/modules-4/msm.la $PREFIX/lib/JAGS/modules-4/mix.so $PREFIX/lib/JAGS/modules-4/mix.la $PREFIX/lib/JAGS/modules-4/lecuyer.so $PREFIX/lib/JAGS/modules-4/lecuyer.la $PREFIX/lib/JAGS/modules-4/glm.so $PREFIX/lib/JAGS/modules-4/glm.la $PREFIX/lib/JAGS/modules-4/dic.so $PREFIX/lib/JAGS/modules-4/dic.la $PREFIX/bin/jags $PREFIX/libexec/jags-terminal

[jq/1.7] [n=5] $PREFIX/lib/libonig.la $PREFIX/lib/libjq.so.1.0.4 $PREFIX/lib/libjq.la $PREFIX/bin/onig-config $PREFIX/bin/jq

[mc/4.8.30] [n=5] $PREFIX/libexec/mc/mc.csh $PREFIX/libexec/mc/mc.sh $PREFIX/libexec/mc/mc-wrapper.csh $PREFIX/libexec/mc/mc-wrapper.sh $PREFIX/bin/mc

[miniconda3/23.5.2-0-py311] [n=52] $PREFIX/bin/icu-config $PREFIX/bin/ncursesw6-config $PREFIX/bin/c_rehash $PREFIX/bin/lzmainfo $PREFIX/bin/xz $PREFIX/bin/nghttpx $PREFIX/bin/xml2-config $PREFIX/bin/xmlcatalog $PREFIX/bin/xmllint $PREFIX/bin/pcre2-config $PREFIX/bin/compile_et $PREFIX/bin/krb5-config $PREFIX/bin/curl-config $PREFIX/bin/2to3-3.11 $PREFIX/bin/idle3.11 $PREFIX/bin/pydoc3.11 $PREFIX/bin/python3.11 $PREFIX/bin/python3.11-config $PREFIX/bin/jsonpointer $PREFIX/bin/tqdm $PREFIX/bin/wheel $PREFIX/bin/jsondiff $PREFIX/bin/jsonpatch $PREFIX/bin/pip $PREFIX/bin/pip3 $PREFIX/bin/conda-content-trust $PREFIX/bin/cph $PREFIX/bin/activate $PREFIX/bin/conda $PREFIX/bin/conda-env $PREFIX/bin/deactivate $PREFIX/bin/normalizer $PREFIX/lib/libtinfow.so.6.4 $PREFIX/lib/libcrypto.so.3 $PREFIX/lib/libxml2.so.2.10.3 $PREFIX/lib/libtcl8.6.so $PREFIX/lib/krb5/plugins/kdb/db2.so $PREFIX/lib/krb5/plugins/preauth/otp.so $PREFIX/lib/libgssapi_krb5.so.2.2 $PREFIX/lib/libkadm5clnt_mit.so.12.0 $PREFIX/lib/libkadm5srv_mit.so.12.0 $PREFIX/lib/libkdb5.so.10.0 $PREFIX/lib/libkrb5.so.3.3 $PREFIX/lib/libcurl.so.4.8.0 $PREFIX/lib/python3.11/config-3.11-x86_64-linux-gnu/python-config.py $PREFIX/lib/python3.11/site-packages/libmambapy/bindings.cpython-311-x86_64-linux-gnu.so $PREFIX/lib/libpython3.11.so.1.0 $PREFIX/sbin/kadmind $PREFIX/sbin/kprop $PREFIX/sbin/kpropd $PREFIX/sbin/krb5kdc $PREFIX/condabin/conda

[proj/4.9.3] [n=6] $PREFIX/lib/libproj.so.12.0.0 $PREFIX/lib/libproj.la $PREFIX/bin/proj $PREFIX/bin/nad2bin $PREFIX/bin/geod $PREFIX/bin/cs2cs

[r/4.3.1] [n=4] $PREFIX/lib64/R/bin/R $PREFIX/lib64/R/bin/Rscript $PREFIX/bin/R $PREFIX/bin/Rscript

[rstudio-server/2023.06.2-561] [n=4] $PREFIX/bin/rstudio-server $PREFIX/extras/init.d/debian/rstudio-server $PREFIX/extras/init.d/redhat/rstudio-server $PREFIX/extras/init.d/suse/rstudio-server

[sqlite/3.43.1] [n=1] $PREFIX/lib/libsqlite3.la
HenrikBengtsson commented 1 year ago

Now with more details on each type of file:

bcftools

   Type of files:
     1. application/x-executable; charset=binary: [n=1] $PREFIX/bin/bcftools

   [bcftools/1.18] Detected absolute paths in executables: [n=1] $PREFIX/bin/bcftools

byobu

   Type of files:
     1. text/x-python; charset=us-ascii: [n=1] $PREFIX/lib/byobu/include/config.py
     2. text/x-shellscript; charset=us-ascii: [n=27] $PREFIX/bin/byobu $PREFIX/bin/byobu-config $PREFIX/bin/byobu-ctrl-a $PREFIX/bin/byobu-disable $PREFIX/bin/byobu-disable-prompt $PREFIX/bin/byobu-enable $PREFIX/bin/byobu-export $PREFIX/bin/byobu-janitor $PREFIX/bin/byobu-launch $PREFIX/bin/byobu-launcher-install $PREFIX/bin/byobu-launcher-uninstall $PREFIX/bin/byobu-layout $PREFIX/bin/byobu-quiet $PREFIX/bin/byobu-reconnect-sockets $PREFIX/bin/byobu-select-profile $PREFIX/bin/byobu-ugraph $PREFIX/bin/byobu-enable-prompt $PREFIX/bin/byobu-launcher $PREFIX/bin/byobu-prompt $PREFIX/bin/byobu-select-backend $PREFIX/bin/byobu-select-session $PREFIX/bin/byobu-status-detail $PREFIX/bin/byobu-silent $PREFIX/bin/byobu-shell $PREFIX/lib/byobu/include/dirs $PREFIX/lib/byobu/include/toggle-utf8 $PREFIX/share/byobu/tests/byobu-time-notifications
     3. text/x-shellscript; charset=utf-8: [n=2] $PREFIX/bin/byobu-status $PREFIX/bin/byobu-ulevel

   [byobu/5.133] Detected absolute paths in executables: [n=30] $PREFIX/bin/byobu $PREFIX/bin/byobu-config $PREFIX/bin/byobu-ctrl-a $PREFIX/bin/byobu-disable $PREFIX/bin/byobu-disable-prompt $PREFIX/bin/byobu-enable $PREFIX/bin/byobu-export $PREFIX/bin/byobu-janitor $PREFIX/bin/byobu-launch $PREFIX/bin/byobu-launcher-install $PREFIX/bin/byobu-launcher-uninstall $PREFIX/bin/byobu-layout $PREFIX/bin/byobu-quiet $PREFIX/bin/byobu-reconnect-sockets $PREFIX/bin/byobu-select-profile $PREFIX/bin/byobu-status $PREFIX/bin/byobu-ugraph $PREFIX/bin/byobu-enable-prompt $PREFIX/bin/byobu-launcher $PREFIX/bin/byobu-prompt $PREFIX/bin/byobu-select-backend $PREFIX/bin/byobu-select-session $PREFIX/bin/byobu-status-detail $PREFIX/bin/byobu-ulevel $PREFIX/bin/byobu-silent $PREFIX/bin/byobu-shell $PREFIX/lib/byobu/include/config.py $PREFIX/lib/byobu/include/dirs $PREFIX/lib/byobu/include/toggle-utf8 $PREFIX/share/byobu/tests/byobu-time-notifications

cutadapt

   Type of files:
     1. text/x-python; charset=us-ascii: [n=4] $PREFIX/venv/bin/wheel $PREFIX/venv/bin/wheel3.8 $PREFIX/venv/bin/wheel-3.8 $PREFIX/venv/bin/wheel3

   [cutadapt/4.4] Detected absolute paths in executables: [n=4] $PREFIX/venv/bin/wheel $PREFIX/venv/bin/wheel3.8 $PREFIX/venv/bin/wheel-3.8 $PREFIX/venv/bin/wheel3

geos

   Type of files:
     1. application/x-sharedlib; charset=binary: [n=1] $PREFIX/lib/libgeos_c.so.1.14.4
     2. text/plain; charset=us-ascii: [n=2] $PREFIX/lib/libgeos.la $PREFIX/lib/libgeos_c.la
     3. text/x-shellscript; charset=us-ascii: [n=1] $PREFIX/bin/geos-config

   [geos/3.9.4] Detected absolute paths in executables: [n=4] $PREFIX/lib/libgeos.la $PREFIX/lib/libgeos_c.so.1.14.4 $PREFIX/lib/libgeos_c.la $PREFIX/bin/geos-config

gsl

   Type of files:
     1. application/x-executable; charset=binary: [n=2] $PREFIX/bin/gsl-randist $PREFIX/bin/gsl-histogram
     2. text/plain; charset=us-ascii: [n=2] $PREFIX/lib/libgslcblas.la $PREFIX/lib/libgsl.la
     3. text/x-shellscript; charset=us-ascii: [n=1] $PREFIX/bin/gsl-config

   [gsl/2.7] Detected absolute paths in executables: [n=5] $PREFIX/lib/libgslcblas.la $PREFIX/lib/libgsl.la $PREFIX/bin/gsl-randist $PREFIX/bin/gsl-histogram $PREFIX/bin/gsl-config

hdf5

   Type of files:
     1. application/x-executable; charset=binary: [n=18] $PREFIX/bin/h5diff $PREFIX/bin/h5ls $PREFIX/bin/h5dump $PREFIX/bin/h5debug $PREFIX/bin/h5repart $PREFIX/bin/h5mkgrp $PREFIX/bin/h5clear $PREFIX/bin/h5import $PREFIX/bin/h5repack $PREFIX/bin/h5jam $PREFIX/bin/h5unjam $PREFIX/bin/h5copy $PREFIX/bin/h5format_convert $PREFIX/bin/h5stat $PREFIX/bin/h5perf_serial $PREFIX/bin/gif2h5 $PREFIX/bin/h52gif $PREFIX/bin/h5watch
     2. application/x-sharedlib; charset=binary: [n=2] $PREFIX/lib/libhdf5.so.200.2.0 $PREFIX/lib/libhdf5_hl.so.200.1.0
     3. text/plain; charset=us-ascii: [n=2] $PREFIX/lib/libhdf5.la $PREFIX/lib/libhdf5_hl.la
     4. text/x-shellscript; charset=us-ascii: [n=3] $PREFIX/bin/h5cc $PREFIX/share/hdf5_examples/c/run-c-ex.sh $PREFIX/share/hdf5_examples/hl/c/run-hlc-ex.sh

   [hdf5/1.12.2] Detected absolute paths in executables: [n=25] $PREFIX/lib/libhdf5.so.200.2.0 $PREFIX/lib/libhdf5.la $PREFIX/lib/libhdf5_hl.so.200.1.0 $PREFIX/lib/libhdf5_hl.la $PREFIX/bin/h5cc $PREFIX/bin/h5diff $PREFIX/bin/h5ls $PREFIX/bin/h5dump $PREFIX/bin/h5debug $PREFIX/bin/h5repart $PREFIX/bin/h5mkgrp $PREFIX/bin/h5clear $PREFIX/bin/h5import $PREFIX/bin/h5repack $PREFIX/bin/h5jam $PREFIX/bin/h5unjam $PREFIX/bin/h5copy $PREFIX/bin/h5format_convert $PREFIX/bin/h5stat $PREFIX/bin/h5perf_serial $PREFIX/bin/gif2h5 $PREFIX/bin/h52gif $PREFIX/bin/h5watch $PREFIX/share/hdf5_examples/c/run-c-ex.sh $PREFIX/share/hdf5_examples/hl/c/run-hlc-ex.sh

jags

   Type of files:
     1. application/x-executable; charset=binary: [n=1] $PREFIX/libexec/jags-terminal
     2. application/x-sharedlib; charset=binary: [n=7] $PREFIX/lib/JAGS/modules-4/basemod.so $PREFIX/lib/JAGS/modules-4/bugs.so $PREFIX/lib/JAGS/modules-4/msm.so $PREFIX/lib/JAGS/modules-4/mix.so $PREFIX/lib/JAGS/modules-4/lecuyer.so $PREFIX/lib/JAGS/modules-4/glm.so $PREFIX/lib/JAGS/modules-4/dic.so
     3. text/plain; charset=us-ascii: [n=9] $PREFIX/lib/libjags.la $PREFIX/lib/libjrmath.la $PREFIX/lib/JAGS/modules-4/basemod.la $PREFIX/lib/JAGS/modules-4/bugs.la $PREFIX/lib/JAGS/modules-4/msm.la $PREFIX/lib/JAGS/modules-4/mix.la $PREFIX/lib/JAGS/modules-4/lecuyer.la $PREFIX/lib/JAGS/modules-4/glm.la $PREFIX/lib/JAGS/modules-4/dic.la
     4. text/x-shellscript; charset=us-ascii: [n=1] $PREFIX/bin/jags

   [jags/4.3.1] Detected absolute paths in executables: [n=18] $PREFIX/lib/libjags.la $PREFIX/lib/libjrmath.la $PREFIX/lib/JAGS/modules-4/basemod.so $PREFIX/lib/JAGS/modules-4/basemod.la $PREFIX/lib/JAGS/modules-4/bugs.so $PREFIX/lib/JAGS/modules-4/bugs.la $PREFIX/lib/JAGS/modules-4/msm.so $PREFIX/lib/JAGS/modules-4/msm.la $PREFIX/lib/JAGS/modules-4/mix.so $PREFIX/lib/JAGS/modules-4/mix.la $PREFIX/lib/JAGS/modules-4/lecuyer.so $PREFIX/lib/JAGS/modules-4/lecuyer.la $PREFIX/lib/JAGS/modules-4/glm.so $PREFIX/lib/JAGS/modules-4/glm.la $PREFIX/lib/JAGS/modules-4/dic.so $PREFIX/lib/JAGS/modules-4/dic.la $PREFIX/bin/jags $PREFIX/libexec/jags-terminal

jq

   Type of files:
     1. application/x-executable; charset=binary: [n=1] $PREFIX/bin/jq
     2. application/x-sharedlib; charset=binary: [n=1] $PREFIX/lib/libjq.so.1.0.4
     3. text/plain; charset=us-ascii: [n=2] $PREFIX/lib/libonig.la $PREFIX/lib/libjq.la
     4. text/x-shellscript; charset=us-ascii: [n=1] $PREFIX/bin/onig-config

   [jq/1.7] Detected absolute paths in executables: [n=5] $PREFIX/lib/libonig.la $PREFIX/lib/libjq.so.1.0.4 $PREFIX/lib/libjq.la $PREFIX/bin/onig-config $PREFIX/bin/jq

mc

   Type of files:
     1. application/x-executable; charset=binary: [n=1] $PREFIX/bin/mc
     2. text/plain; charset=us-ascii: [n=4] $PREFIX/libexec/mc/mc.csh $PREFIX/libexec/mc/mc.sh $PREFIX/libexec/mc/mc-wrapper.csh $PREFIX/libexec/mc/mc-wrapper.sh

   [mc/4.8.30] Detected absolute paths in executables: [n=5] $PREFIX/libexec/mc/mc.csh $PREFIX/libexec/mc/mc.sh $PREFIX/libexec/mc/mc-wrapper.csh $PREFIX/libexec/mc/mc-wrapper.sh $PREFIX/bin/mc

miniconda3

   Type of files:
     1. application/x-executable; charset=binary: [n=10] $PREFIX/bin/lzmainfo $PREFIX/bin/xz $PREFIX/bin/nghttpx $PREFIX/bin/xmlcatalog $PREFIX/bin/xmllint $PREFIX/bin/python3.11 $PREFIX/sbin/kadmind $PREFIX/sbin/kprop $PREFIX/sbin/kpropd $PREFIX/sbin/krb5kdc
     2. application/x-sharedlib; charset=binary: [n=14] $PREFIX/lib/libtinfow.so.6.4 $PREFIX/lib/libcrypto.so.3 $PREFIX/lib/libxml2.so.2.10.3 $PREFIX/lib/libtcl8.6.so $PREFIX/lib/krb5/plugins/kdb/db2.so $PREFIX/lib/krb5/plugins/preauth/otp.so $PREFIX/lib/libgssapi_krb5.so.2.2 $PREFIX/lib/libkadm5clnt_mit.so.12.0 $PREFIX/lib/libkadm5srv_mit.so.12.0 $PREFIX/lib/libkdb5.so.10.0 $PREFIX/lib/libkrb5.so.3.3 $PREFIX/lib/libcurl.so.4.8.0 $PREFIX/lib/python3.11/site-packages/libmambapy/bindings.cpython-311-x86_64-linux-gnu.so $PREFIX/lib/libpython3.11.so.1.0
     3. text/plain; charset=us-ascii: [n=4] $PREFIX/bin/pydoc3.11 $PREFIX/bin/conda $PREFIX/bin/conda-env $PREFIX/condabin/conda
     4. text/x-perl; charset=us-ascii: [n=1] $PREFIX/bin/c_rehash
     5. text/x-python; charset=us-ascii: [n=13] $PREFIX/bin/2to3-3.11 $PREFIX/bin/idle3.11 $PREFIX/bin/jsonpointer $PREFIX/bin/tqdm $PREFIX/bin/wheel $PREFIX/bin/jsondiff $PREFIX/bin/jsonpatch $PREFIX/bin/pip $PREFIX/bin/pip3 $PREFIX/bin/conda-content-trust $PREFIX/bin/cph $PREFIX/bin/normalizer $PREFIX/lib/python3.11/config-3.11-x86_64-linux-gnu/python-config.py
     6. text/x-shellscript; charset=us-ascii: [n=10] $PREFIX/bin/icu-config $PREFIX/bin/ncursesw6-config $PREFIX/bin/xml2-config $PREFIX/bin/pcre2-config $PREFIX/bin/compile_et $PREFIX/bin/krb5-config $PREFIX/bin/curl-config $PREFIX/bin/python3.11-config $PREFIX/bin/activate $PREFIX/bin/deactivate

   [miniconda3/23.5.2-0-py311] Detected absolute paths in executables: [n=52] $PREFIX/bin/icu-config $PREFIX/bin/ncursesw6-config $PREFIX/bin/c_rehash $PREFIX/bin/lzmainfo $PREFIX/bin/xz $PREFIX/bin/nghttpx $PREFIX/bin/xml2-config $PREFIX/bin/xmlcatalog $PREFIX/bin/xmllint $PREFIX/bin/pcre2-config $PREFIX/bin/compile_et $PREFIX/bin/krb5-config $PREFIX/bin/curl-config $PREFIX/bin/2to3-3.11 $PREFIX/bin/idle3.11 $PREFIX/bin/pydoc3.11 $PREFIX/bin/python3.11 $PREFIX/bin/python3.11-config $PREFIX/bin/jsonpointer $PREFIX/bin/tqdm $PREFIX/bin/wheel $PREFIX/bin/jsondiff $PREFIX/bin/jsonpatch $PREFIX/bin/pip $PREFIX/bin/pip3 $PREFIX/bin/conda-content-trust $PREFIX/bin/cph $PREFIX/bin/activate $PREFIX/bin/conda $PREFIX/bin/conda-env $PREFIX/bin/deactivate $PREFIX/bin/normalizer $PREFIX/lib/libtinfow.so.6.4 $PREFIX/lib/libcrypto.so.3 $PREFIX/lib/libxml2.so.2.10.3 $PREFIX/lib/libtcl8.6.so $PREFIX/lib/krb5/plugins/kdb/db2.so $PREFIX/lib/krb5/plugins/preauth/otp.so $PREFIX/lib/libgssapi_krb5.so.2.2 $PREFIX/lib/libkadm5clnt_mit.so.12.0 $PREFIX/lib/libkadm5srv_mit.so.12.0 $PREFIX/lib/libkdb5.so.10.0 $PREFIX/lib/libkrb5.so.3.3 $PREFIX/lib/libcurl.so.4.8.0 $PREFIX/lib/python3.11/config-3.11-x86_64-linux-gnu/python-config.py $PREFIX/lib/python3.11/site-packages/libmambapy/bindings.cpython-311-x86_64-linux-gnu.so $PREFIX/lib/libpython3.11.so.1.0 $PREFIX/sbin/kadmind $PREFIX/sbin/kprop $PREFIX/sbin/kpropd $PREFIX/sbin/kr

proj

   Type of files:
     1. application/x-executable; charset=binary: [n=4] $PREFIX/bin/proj $PREFIX/bin/nad2bin $PREFIX/bin/geod $PREFIX/bin/cs2cs
     2. application/x-sharedlib; charset=binary: [n=1] $PREFIX/lib/libproj.so.12.0.0
     3. text/plain; charset=us-ascii: [n=1] $PREFIX/lib/libproj.la

   [proj/4.9.3] Detected absolute paths in executables: [n=6] $PREFIX/lib/libproj.so.12.0.0 $PREFIX/lib/libproj.la $PREFIX/bin/proj $PREFIX/bin/nad2bin $PREFI
X/bin/geod $PREFIX/bin/cs2cs

r

   Type of files:
     1. application/x-executable; charset=binary: [n=2] $PREFIX/lib64/R/bin/Rscript $PREFIX/bin/Rscript
     2. text/x-shellscript; charset=us-ascii: [n=2] $PREFIX/lib64/R/bin/R $PREFIX/bin/R

   [r/4.3.1] Detected absolute paths in executables: [n=4] $PREFIX/lib64/R/bin/R $PREFIX/lib64/R/bin/Rscript $PREFIX/bin/R $PREFIX/bin/Rscript

rstudio-server

   Type of files:
     1. text/x-shellscript; charset=us-ascii: [n=4] $PREFIX/bin/rstudio-server $PREFIX/extras/init.d/debian/rstudio-server $PREFIX/extras/init.d/redhat/rstudi
o-server $PREFIX/extras/init.d/suse/rstudio-server

   [rstudio-server/2023.06.2-561] Detected absolute paths in executables: [n=4] $PREFIX/bin/rstudio-server $PREFIX/extras/init.d/debian/rstudio-server $PREFIX
/extras/init.d/redhat/rstudio-server $PREFIX/extras/init.d/suse/rstudio-server

sqlite

   Type of files:
     1. text/plain; charset=us-ascii: [n=1] $PREFIX/lib/libsqlite3.la

   [sqlite/3.43.1] Detected absolute paths in executables: [n=1] $PREFIX/lib/libsqlite3.la