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HenrikBengtsson / CBI-software

A Scientific Software Stack for HPC (CentOS oriented)
https://wynton.ucsf.edu/hpc/software/software-repositories.html
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bedtools2: 'make all' gets stuck in a loop #12

Closed HenrikBengtsson closed 3 years ago

HenrikBengtsson commented 4 years ago

Issue

$ cd bedtools/
$ make all
...
make[13]: *** [/tmp/henrik/20200818/bedtools2-2.29.2/bin/bedtools] Interrupt
make[12]: *** [/tmp/henrik/20200818/bedtools2-2.29.2/bin/bedtools] Interrupt
make[11]: *** [/tmp/henrik/20200818/bedtools2-2.29.2/bin/bedtools] Interrupt
make[10]: *** [/tmp/henrik/20200818/bedtools2-2.29.2/bin/bedtools] Interrupt
make[9]: *** [/tmp/henrik/20200818/bedtools2-2.29.2/bin/bedtools] Interrupt
make[8]: *** [/tmp/henrik/20200818/bedtools2-2.29.2/bin/bedtools] Interrupt
make[7]: *** [/tmp/henrik/20200818/bedtools2-2.29.2/bin/bedtools] Interrupt
make[6]: *** [/tmp/henrik/20200818/bedtools2-2.29.2/bin/bedtools] Interrupt
make[5]: *** [/tmp/henrik/20200818/bedtools2-2.29.2/bin/bedtools] Interrupt
make[4]: *** [/tmp/henrik/20200818/bedtools2-2.29.2/bin/bedtools] Interrupt
make[3]: *** [/tmp/henrik/20200818/bedtools2-2.29.2/bin/bedtools] Interrupt
make[2]: *** [/tmp/henrik/20200818/bedtools2-2.29.2/bin/bedtools] Interrupt
make[1]: *** [/tmp/henrik/20200818/bedtools2-2.29.2/bin/bedtools] Interrupt
make: *** [all] Interrupt

Workaround

$ cd bedtools/
$ make download
$ make install
$ make install_module