UPDATE: September 2021

[HenrikBengtsson]

C4:

• [x] bamUtil 1.0.15 (fails to install on Wynton?!?)
• [x] bat 0.18.3
• [x] bcftools 1.13 + add link to GitHub
• [x] blast 2.12.0
• [x] bowtie 1.3.1
• [x] bowtie2 2.4.4
• [x] cellranger 6.1.1
• [x] emacs 27.2
• [x] fzf 0.27.2
• [x] gatk 4.2.2.0
• [x] glow 1.4.1
• [x] gsl 2.7
• [x] hdf5 1.12.1
• [ ] hisat 2.2.1 (only 2.2.0 is available)
• [x] htop 3.1.0
• [x] htslib 1.13 + add link to GitHub
• [x] igv 2.11.0
• [x] mc 4.8.27
• [x] pandoc 2.14.2
• [x] picard 2.26.2
• [ ] plink ???6.24beta
• [x] proj ??? + fix URL
• [x] rclone 1.56.1
• [x] ripgrep 13.0.0
• [x] rstudio 1.4.1717 + add https://www.rstudio.com/products/rstudio/download/
• [x] salmon 1.5.2
• [x] shellcheck 0.7.2
• [x] snpeff 5.0e
• [x] sratoolkit 2.11.1
• [x] star 2.7.9a
• [ ] tmux 3.2a + https://github.com/tmux/tmux
• [x] samtools 1.13 + add link to GitHub

[HenrikBengtsson]

Wynton:

• [ ] bamUtil 1.0.15 (fails to install on Wynton?!?)
• [x] bat 0.18.3
• [x] bcftools 1.13 + add link to GitHub
• [x] blast 2.12.0
• [x] bowtie 1.3.1
• [x] bowtie2 2.4.4
• [x] cellranger 6.1.1
• [x] emacs 27.2
• [x] fzf 0.27.2
• [x] gatk 4.2.2.0
• [x] glow 1.4.1
• [x] gsl 2.7
• [x] hdf5 1.12.1
• [ ] hisat 2.2.1 (only 2.2.0 is available)
• [x] htop 3.1.0
• [x] htslib 1.13 + add link to GitHub
• [x] igv 2.11.0
• [x] mc 4.8.27
• [x] pandoc 2.14.2
• [x] picard 2.26.2
• [ ] plink ???6.24beta
• [x] proj ??? + fix URL
• [x] rclone 1.56.1
• [x] ripgrep 13.0.0
• [x] rstudio 1.4.1717 + add https://www.rstudio.com/products/rstudio/download/
• [x] salmon 1.5.2
• [x] shellcheck 0.7.2
• [x] snpeff 5.0e
• [x] sratoolkit 2.11.1
• [x] star 2.7.9a
• [ ] tmux 3.2a + https://github.com/tmux/tmux
• [x] samtools 1.13 + add link to GitHub