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HenrikBengtsson / CBI-software

A Scientific Software Stack for HPC (CentOS oriented)
https://wynton.ucsf.edu/hpc/software/software-repositories.html
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Don't expand env vars when creating aliases #59

Closed HenrikBengtsson closed 2 years ago

HenrikBengtsson commented 2 years ago

For example, instead of ​set_alias("picard", "java -jar " .. pathJoin(home, "picard.jar"))

It's better to use: ​set_alias("picard", "java -jar \"$PICARD_HOME/picard.jar\"")

This way, the risk of someone copying the absolute path will decrease

HenrikBengtsson commented 2 years ago

Done this where there's an environment variable to use.