search

HenrikBengtsson / CBI-software

A Scientific Software Stack for HPC (CentOS oriented)
https://wynton.ucsf.edu/hpc/software/software-repositories.html
5 stars 2 forks source link

picard & snpeff: Use functions instead of aliases(?) #65

Closed HenrikBengtsson closed 1 year ago

HenrikBengtsson commented 2 years ago

Seems like their aliases do not always work in job scripts. Does it help to define functions instead?

set_shell_function(): https://lmod.readthedocs.io/en/latest/015_writing_modules.html#setting-aliases-and-shell-functions

HenrikBengtsson commented 1 year ago

Deployed on C4. See also #75