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HenrikBengtsson / CBI-software

A Scientific Software Stack for HPC (CentOS oriented)
https://wynton.ucsf.edu/hpc/software/software-repositories.html
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kallisto 0.48.0: libstdc++.so.6 errors #67

Closed HenrikBengtsson closed 11 months ago

HenrikBengtsson commented 2 years ago

The pre-built kallisto v0.48.0 binaries gives:

$ kallisto
kallisto: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by kallisto)
kallisto: /lib64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by kallisto)
kallisto: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by kallisto)
kallisto: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.22' not found (required by kallisto)

on C4 and Wynton (both CentOS 7.9).

Might have to install from source going forward.

HenrikBengtsson commented 2 years ago

kallisto/0.48.0 has been pulled from C4 and Wynton. Latest version is now kallisto/0.46.2.

HenrikBengtsson commented 2 years ago

Reported upstream: https://github.com/pachterlab/kallisto/issues/347

HenrikBengtsson commented 2 years ago

Might have to build from source

HenrikBengtsson commented 11 months ago

kallisto 0.50.0 is now available, making the need for v 0.48.0 less of interest.