HenrikBengtsson / CostelloPSCNSeq

R package: Parent-specific Copy-number Estimation Pipeline using HT-Seq Data

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POTENTIAL BUG: Lack of newline at end of sampleData/samples.tsv cause 3.pscbs.R to fail #13

Closed HenrikBengtsson closed 7 years ago

HenrikBengtsson commented 7 years ago

Issue

Lack of newline at end of sampleData/samples.tsv may cause 3.pscbs.R to fail.

Action

[ ] Reproduce
[ ] Detect mistake and given informative error message.

HenrikBengtsson commented 7 years ago

@SRHilz, could you reproduce the problems when dropping that newline?

SRHilz commented 7 years ago

No, I have tried a few times dropping the newline at different time points (dropping at 1.mpileup, at 2.sequenza, and 3.pscbs. It is not reproducible. I will let you know if I ever have a run fail again where that was the only warning/error, but for the time being, doesn't seem worth investigating further. Thanks!

HenrikBengtsson commented 7 years ago

Thanks. Somehow that makes more sense from what I know how R works. Let's assume it was a hiccup.