Project folder out of date

[HenrikBengtsson]

Oh my, I just checked the /home/jocostello/repositories/HenrikBengtsson/Costello-PSCN-Seq project folder. It looks like it has not been updated in a while, so it's out of sync with this repo. That makes me wonder about the R package versions too. I also see there are lots of new scripts in there so I cannot figure out which ones are used and which aren't.

@ivan108, exactly how do you run these scripts?

Assuming these are still run with:

module purge
module load CBC r/3.4.4 samtools/1.3.1

what does

library("aroma.seq")
sessionDetails()

report?

[ivan108]

I am launching job like that:

qsub -l vmem=200gb -M "${EMAIL:?}" -m ae 1.mpileup.pbs

See attached output for

library("aroma.seq")
sessionDetails()

test.R.out.future.txt