Command line: Turn doNnn() functions into CmdArgsFunction:s

HenrikBengtsson / aroma.affymetrix

🔬 R package: Analysis of Large Affymetrix Microarray Data Sets

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Closed HenrikBengtsson closed 8 years ago

HenrikBengtsson commented 8 years ago

Turn doNnn() functions into CmdArgsFunction:s, e.g.

doCRMAv2 <- CmdArgsFunction(doCRMAv2)

such that we can call these functions from the command line as:

Rscript -e aroma.affymetrix::doCRMAv2 --dataSet=HapMap270,testSet --chipType=GenomeWideSNP_6