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HenrikBengtsson / aroma.affymetrix

🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
https://cran.r-project.org/package=aroma.affymetrix
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ROBUSTNESS: Make sure search file reg exp patterns have trailing $ #23

Closed HenrikBengtsson closed 7 years ago

HenrikBengtsson commented 7 years ago

Make sure all regular expressions used for searching / setting up file sets have trailing $. For instance, instead of:

  pattern <- sprintf("%s[.]asb", typeTags);
  res <- AromaUnitFracBCnBinarySet$byPath(outPath, pattern=pattern);

use

  pattern <- sprintf("%s.asb$", typeTags);
  res <- AromaUnitFracBCnBinarySet$byPath(outPath, pattern=pattern);
HenrikBengtsson commented 7 years ago

Nothing to be fixed; no such instances found using

grep -E "(pattern.* <-|pattern=\")" R/*.R | grep "\"" | grep -vF "$"