Updating from 3.0.0 to 3.1.0 failed

[ThomasGro]

Hi, I have tried to update my Aroma installation to new 3.1.0 release by using: 'source('http://callr.org/install#aroma.affymetrix')' But that failed.

Please see the R session infor below:

source('http://callr.org/install#aroma.affymetrix') Installing/updating package: ‘aroma.affymetrix’

Package updates: Previous Current aroma.affymetrix 3.0.0 3.0.0

Package installed/updated. Load it by:

library('aroma.affymetrix')

(These commands have been added to your commands history.)

sessionInfo() R version 3.2.1 (2015-06-18) Platform: x86_64-unknown-linux-gnu (64-bit)

locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages: [1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached): [1] tools_3.2.1

[HenrikBengtsson]

Sounds like there was an error during the download / installation process; was there - did you check the output?

[ThomasGro]

Yes, indeed. It were errors in the installation process, which were however not highlighted or even solved when using the ‘http://callr.org/install’ mechanism. Also, I needed to do a combined installation using ‘install-packages()’ and also Bioconductor ‘biocLite()’ mechanisms to get all dependencies resolved, using R 3.4.1. But it finally worked. Thomas Von: Henrik Bengtsson [mailto:notifications@github.com] Gesendet: Dienstag, 12. September 2017 14:47 An: HenrikBengtsson/aroma.affymetrix aroma.affymetrix@noreply.github.com Cc: Thomas Grombacher Thomas.Grombacher@merckgroup.com; Author author@noreply.github.com Betreff: Re: [HenrikBengtsson/aroma.affymetrix] Updating from 3.0.0 to 3.1.0 failed (#30)

Sounds like there was an error during the download / installation process; was there - did you check the output?

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[ThomasGro]

Solved by using different installation mechanisms.