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HenrikBengtsson / aroma.affymetrix

🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
https://cran.r-project.org/package=aroma.affymetrix
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ROBUSTNESS: Add explicit 'stringsAsFactors' arguments [read.table] #37

Closed HenrikBengtsson closed 3 years ago

HenrikBengtsson commented 4 years ago 
$ $ (cd aroma.affymetrix; grep -A 1 -F "read.table" -- R/*.R;)
R/AffymetrixCsvGenomeInformation.R:  df <- read.table(pathname, colClasses=colClasses, header=TRUE, sep=",", quote="\"", fill=TRUE, check.names=FALSE, na.strings=c("---"), ...)
R/AffymetrixCsvGenomeInformation.R-
--
R/CnChipEffectSet.importFromDChip.R:    unitNames <- read.table(file=con, colClasses=colClasses, sep=sep, header=FALSE)
R/CnChipEffectSet.importFromDChip.R-    unitNames <- unlist(unitNames, use.names=FALSE)
--
R/CnChipEffectSet.importFromDChip.R:    data <- read.table(file=con, colClasses=colClasses, sep=sep,
R/CnChipEffectSet.importFromDChip.R-                 header=FALSE, comment.char="", quote="", fill=FALSE)