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HenrikBengtsson / aroma.affymetrix

🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
https://cran.r-project.org/package=aroma.affymetrix
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CLEANUP: Stop testing against deprecated future.BatchJobs #41

Closed HenrikBengtsson closed 3 years ago

HenrikBengtsson commented 3 years ago 
$ grep -iF batchjobs -r --include="*.R"
inst/testScripts/system/chipTypes/HG-U133_Plus_2/21.BackgroundCorrections.R:## setParallelEngine(aromaSettings, "BatchJobs")
inst/testScripts/futures/HG-U133_Plus_2/14.NormExpBackgroundCorrection.R:if (require("future.BatchJobs")) {
inst/testScripts/futures/HG-U133_Plus_2/14.NormExpBackgroundCorrection.R:  strategies <- c(strategies, "batchjobs_local")
inst/testScripts/futures/HG-U133_Plus_2/14.NormExpBackgroundCorrection.R:    strategies <- c(strategies, "batchjobs_torque")
inst/testScripts/futures/HG-U133_Plus_2/12.GcRmaBackgroundCorrection.R:if (require("future.BatchJobs")) {
inst/testScripts/futures/HG-U133_Plus_2/12.GcRmaBackgroundCorrection.R:  strategies <- c(strategies, "batchjobs_local")
inst/testScripts/futures/HG-U133_Plus_2/12.GcRmaBackgroundCorrection.R:    strategies <- c(strategies, "batchjobs_torque")
inst/testScripts/futures/HG-U133_Plus_2/13.RmaBackgroundCorrection.R:if (require("future.BatchJobs")) {
inst/testScripts/futures/HG-U133_Plus_2/13.RmaBackgroundCorrection.R:  strategies <- c(strategies, "batchjobs_local")
inst/testScripts/futures/HG-U133_Plus_2/13.RmaBackgroundCorrection.R:    strategies <- c(strategies, "batchjobs_torque")
inst/testScripts/futures/HG-U133_Plus_2/11.OpticalBackgroundCorrection.R:if (require("future.BatchJobs")) {
inst/testScripts/futures/HG-U133_Plus_2/11.OpticalBackgroundCorrection.R:  strategies <- c(strategies, "batchjobs_local")
inst/testScripts/futures/HG-U133_Plus_2/11.OpticalBackgroundCorrection.R:    strategies <- c(strategies, "batchjobs_torque")
inst/testScripts/futures/GenomeWideSNP_6/11.AllelicCrosstalkCalibration.R:if (require("future.BatchJobs")) {
inst/testScripts/futures/GenomeWideSNP_6/11.AllelicCrosstalkCalibration.R:  strategies <- c(strategies, "batchjobs_local")
inst/testScripts/futures/GenomeWideSNP_6/11.AllelicCrosstalkCalibration.R:    strategies <- c(strategies, "batchjobs_torque")
inst/testScripts/futures/GenomeWideSNP_6/11.BasePositionNormalization.R:if (require("future.BatchJobs")) {
inst/testScripts/futures/GenomeWideSNP_6/11.BasePositionNormalization.R:  strategies <- c(strategies, "batchjobs_local")
inst/testScripts/futures/GenomeWideSNP_6/11.BasePositionNormalization.R:    strategies <- c(strategies, "batchjobs_torque")
inst/testScripts/futures/Hs_PromPR_v02/11.MatNormalization.R:if (require("future.BatchJobs")) {
inst/testScripts/futures/Hs_PromPR_v02/11.MatNormalization.R:  strategies <- c(strategies, "batchjobs_local")
inst/testScripts/futures/Hs_PromPR_v02/11.MatNormalization.R:    strategies <- c(strategies, "batchjobs_torque")
inst/testScripts/futures/Mapping10K_Xba142/11.UniqueCDF.R:if (require("future.BatchJobs")) {
inst/testScripts/futures/Mapping10K_Xba142/11.UniqueCDF.R:  strategies <- c(strategies, "batchjobs_local")
inst/testScripts/futures/Mapping10K_Xba142/11.UniqueCDF.R:    strategies <- c(strategies, "batchjobs_torque")
inst/testScripts/futures/Mapping10K_Xba142/11.AllelicCrosstalkCalibration.R:if (require("future.BatchJobs")) {
inst/testScripts/futures/Mapping10K_Xba142/11.AllelicCrosstalkCalibration.R:  strategies <- c(strategies, "batchjobs_local")
inst/testScripts/futures/Mapping10K_Xba142/11.AllelicCrosstalkCalibration.R:    strategies <- c(strategies, "batchjobs_torque")
inst/testScripts/futures/Mapping10K_Xba142/11.BasePositionNormalization.R:if (require("future.BatchJobs")) {
inst/testScripts/futures/Mapping10K_Xba142/11.BasePositionNormalization.R:  strategies <- c(strategies, "batchjobs_local")
inst/testScripts/futures/Mapping10K_Xba142/11.BasePositionNormalization.R:    strategies <- c(strategies, "batchjobs_torque")