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HenrikBengtsson / aroma.seq

🔬 R package: aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework
https://github.com/HenrikBengtsson/aroma.seq
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findHTSeq() fails to identify version and gives a warning #10

Closed HenrikBengtsson closed 9 years ago

HenrikBengtsson commented 9 years ago

findHTSeq() fails to identify version and gives a warning, e.g.

> library(aroma.seq)
> findHTSeq()
                          htseq-count
"/home/henrik/.local/bin/htseq-count"
attr(,"version")
character(0)
Warning message:
In findExternal(command = command, path = path, versionPattern = versionPattern,  :
  Failed to identify 'version' using regular expression '.*version ([0-9.]+(|p[0-9]+)).*':
 'import site' failed; use -v for traceback\nTraceback (most recent call last):\n
  File "/home/henrik/.local/bin/htseq-count", line 4, in <module>\n
    import pkg_resources\nImportError: No module named pkg_resources
HenrikBengtsson commented 9 years ago

This was an issue with clashing Python installations and PYTHONPATH settings on a local file system. Nothing to see, move on...