Use Ensembl-flavored organism names, e.g. Homo_sapiens (instead of HomoSapiens)

HenrikBengtsson / aroma.seq

🔬 R package: aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

https://github.com/HenrikBengtsson/aroma.seq

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Closed HenrikBengtsson closed 9 years ago

HenrikBengtsson commented 9 years ago

Use Ensembl-flavored organism names, e.g. Homo_sapiens (instead of HomoSapiens).

PROS:

This removes the home-made standard of using CamelCase.
This allows for automatic organism assignment/recognition for Ensembl annotation data files, e.g. Mus_musculus.GRCm38.dna.chromosome.7.fa => Mus_musculus.

CONS:

ACTIONS:

HenrikBengtsson commented 9 years ago

Done. Checked.