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HenrikBengtsson / aroma.seq

🔬 R package: aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework
https://github.com/HenrikBengtsson/aroma.seq
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SPEED: Store BAM index and flag stats on file #36

Open HenrikBengtsson opened 8 years ago

HenrikBengtsson commented 8 years ago

Store samtools idxstats and flagstats on file, e.g. foo.bai.idxstats and foo.bam.flagstats.

Make sure those files newer than BAM index/BAM file, otherwise regenerate. Same for BAI.