HenrikBengtsson / conda-stage

conda-stage: Stage a Conda Environment on Local Disk
https://github.com/HenrikBengtsson/conda-stage
ISC License
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Stray output from conda-stage --stage #29

Closed HenrikBengtsson closed 2 years ago

HenrikBengtsson commented 2 years ago
CONDA_STAGE_ACTION=activate; conda deactivate; conda activate "/tmp/conda-stage-m4jA/snowflakes"

Looks like a stray "echo $cmd"

HenrikBengtsson commented 2 years ago

It's not just stray output, the activate actually never takes place. More clues;

(snakes) [hb-test@dev2 ~]$ CONDA_STAGE_DEBUG=true conda activate snakes                                                                                                 
/wynton/home/bengtsson/hb-test/miniconda3/envs/snakes/etc/conda/activate.d/zzz.conda-stage-auto.sh ...
Auto-staging Conda environment 'snakes'. To disable, call 'conda-stage --auto-stage=disable'
DEBUG: conda-stage() ...
DEBUG: Next CLI argument: --stage
DEBUG: action: stage
DEBUG: debug: true
DEBUG: verbose: true
DEBUG: force: false
DEBUG: args: [n=0] 
INFO: Staging current Conda environment (/wynton/home/bengtsson/hb-test/miniconda3/envs/snakes) to local disk ...
DEBUG: - Using conda-stage 0.5.0
DEBUG: - Current Conda environment: snakes
DEBUG: - Using conda 4.12.0
INFO: [ONCE] Installing conda-pack, because it was missing ...
DEBUG: Additional 'conda install' options: --yes
Collecting package metadata (current_repodata.json): done
Solving environment: done

## Package Plan ##

  environment location: /wynton/home/bengtsson/hb-test/miniconda3/envs/snakes

  added / updated specs:
    - conda-pack

The following NEW packages will be INSTALLED:

  conda-pack         conda-forge/noarch::conda-pack-0.7.0-pyh6c4a22f_0
  python_abi         conda-forge/linux-64::python_abi-3.9-2_cp39

The following packages will be SUPERSEDED by a higher-priority channel:

  ca-certificates    pkgs/main::ca-certificates-2022.3.29-~ --> conda-forge::ca-certificates-2021.10.8-ha878542_0
  certifi            pkgs/main::certifi-2021.10.8-py39h06a~ --> conda-forge::certifi-2021.10.8-py39hf3d152e_2

Preparing transaction: done
Verifying transaction: done
Executing transaction: done
INFO: Total installation time: 31 seconds
DEBUG: - Using conda-pack 0.7.0
DEBUG: - CONDA_PREFIX=/wynton/home/bengtsson/hb-test/miniconda3/envs/snakes
DEBUG: - Stage cache path: /wynton/home/bengtsson/hb-test/miniconda3/envs
DEBUG: - Packaged Conda environment: /wynton/home/bengtsson/hb-test/miniconda3/envs/snakes.tar.gz (59116146 bytes; 2022-04-16 20:37:50.000000000 -0700)
DEBUG: - Stage path: /tmp/conda-stage-jXaB/snakes
INFO: Extracting /wynton/home/bengtsson/hb-test/miniconda3/envs/snakes.tar.gz (59116146 bytes; 2022-04-16 20:37:50.000000000 -0700) to /tmp/conda-stage-jXaB/snakes
INFO: Total extract time: 2 seconds
INFO: Disable any /tmp/conda-stage-jXaB/snakes/etc/conda/activate.d/*.conda-stage-auto.sh scripts
INFO: Activating staged environment
INFO: Unpacking (relocating)
INFO: Total 'conda-unpack' time: 0 seconds
DEBUG: Command to activate staged Conda environment: CONDA_STAGE_ACTION=activate; conda deactivate; conda activate "/tmp/conda-stage-jXaB/snakes"
INFO: Activating staged Conda environment: /tmp/conda-stage-jXaB/snakes
DEBUG: action='stage
stage'
DEBUG: CONDA_STAGE_ACTION=stage
stage
CONDA_STAGE_ACTION=activate; conda deactivate; conda activate "/tmp/conda-stage-jXaB/snakes"
DEBUG: conda-stage() ... done (exit_code=0)
/wynton/home/bengtsson/hb-test/miniconda3/envs/snakes/etc/conda/activate.d/zzz.conda-stage-auto.sh ... done