Closed HenrikBengtsson closed 2 years ago
It's not just stray output, the activate actually never takes place. More clues;
(snakes) [hb-test@dev2 ~]$ CONDA_STAGE_DEBUG=true conda activate snakes
/wynton/home/bengtsson/hb-test/miniconda3/envs/snakes/etc/conda/activate.d/zzz.conda-stage-auto.sh ...
Auto-staging Conda environment 'snakes'. To disable, call 'conda-stage --auto-stage=disable'
DEBUG: conda-stage() ...
DEBUG: Next CLI argument: --stage
DEBUG: action: stage
DEBUG: debug: true
DEBUG: verbose: true
DEBUG: force: false
DEBUG: args: [n=0]
INFO: Staging current Conda environment (/wynton/home/bengtsson/hb-test/miniconda3/envs/snakes) to local disk ...
DEBUG: - Using conda-stage 0.5.0
DEBUG: - Current Conda environment: snakes
DEBUG: - Using conda 4.12.0
INFO: [ONCE] Installing conda-pack, because it was missing ...
DEBUG: Additional 'conda install' options: --yes
Collecting package metadata (current_repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /wynton/home/bengtsson/hb-test/miniconda3/envs/snakes
added / updated specs:
- conda-pack
The following NEW packages will be INSTALLED:
conda-pack conda-forge/noarch::conda-pack-0.7.0-pyh6c4a22f_0
python_abi conda-forge/linux-64::python_abi-3.9-2_cp39
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2022.3.29-~ --> conda-forge::ca-certificates-2021.10.8-ha878542_0
certifi pkgs/main::certifi-2021.10.8-py39h06a~ --> conda-forge::certifi-2021.10.8-py39hf3d152e_2
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
INFO: Total installation time: 31 seconds
DEBUG: - Using conda-pack 0.7.0
DEBUG: - CONDA_PREFIX=/wynton/home/bengtsson/hb-test/miniconda3/envs/snakes
DEBUG: - Stage cache path: /wynton/home/bengtsson/hb-test/miniconda3/envs
DEBUG: - Packaged Conda environment: /wynton/home/bengtsson/hb-test/miniconda3/envs/snakes.tar.gz (59116146 bytes; 2022-04-16 20:37:50.000000000 -0700)
DEBUG: - Stage path: /tmp/conda-stage-jXaB/snakes
INFO: Extracting /wynton/home/bengtsson/hb-test/miniconda3/envs/snakes.tar.gz (59116146 bytes; 2022-04-16 20:37:50.000000000 -0700) to /tmp/conda-stage-jXaB/snakes
INFO: Total extract time: 2 seconds
INFO: Disable any /tmp/conda-stage-jXaB/snakes/etc/conda/activate.d/*.conda-stage-auto.sh scripts
INFO: Activating staged environment
INFO: Unpacking (relocating)
INFO: Total 'conda-unpack' time: 0 seconds
DEBUG: Command to activate staged Conda environment: CONDA_STAGE_ACTION=activate; conda deactivate; conda activate "/tmp/conda-stage-jXaB/snakes"
INFO: Activating staged Conda environment: /tmp/conda-stage-jXaB/snakes
DEBUG: action='stage
stage'
DEBUG: CONDA_STAGE_ACTION=stage
stage
CONDA_STAGE_ACTION=activate; conda deactivate; conda activate "/tmp/conda-stage-jXaB/snakes"
DEBUG: conda-stage() ... done (exit_code=0)
/wynton/home/bengtsson/hb-test/miniconda3/envs/snakes/etc/conda/activate.d/zzz.conda-stage-auto.sh ... done
Looks like a stray "echo $cmd"