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HenrikBengtsson / illuminaio

🔬 R package: This is the Bioconductor devel version of the illuminaio package.
http://bioconductor.org/packages/devel/bioc/html/illuminaio.html
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adding support for reading parts of the IDAT for unencrypted files #11

Closed kasperdanielhansen closed 6 years ago

kasperdanielhansen commented 6 years ago

See NEWS entry. This is not super general - it adds support for two modes of restricted reading that I need in minfi: (1) Just returning the number of "probes" in the IDAT file (called nSNPsRead in illuminaio/docs) (2) Just returning the probenames (called IlluminaID).

codecov-io commented 6 years ago

Codecov Report

Merging #11 into develop will decrease coverage by 0.73%. The diff coverage is 50%.

Impacted file tree graph

@@             Coverage Diff             @@
##           develop      #11      +/-   ##
===========================================
- Coverage    77.25%   76.51%   -0.74%     
===========================================
  Files            9        9              
  Lines          466      477      +11     
===========================================
+ Hits           360      365       +5     
- Misses         106      112       +6
Impacted Files Coverage Δ
R/readIDAT_nonenc.R 89.15% <37.5%> (-2.62%) :arrow_down:
R/readIDAT.R 82.6% <75%> (-2.4%) :arrow_down:

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