issues
search
HenrikSpiegel
/
Screener
Repository for Master Thesis
GNU General Public License v3.0
0
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Handin
#39
HenrikSpiegel
opened
1 year ago
0
Before handin:
#38
HenrikSpiegel
closed
1 year ago
0
Report - smaller tasks
#37
HenrikSpiegel
closed
1 year ago
2
Systematic per cluster error (related to homogeneity)
#36
HenrikSpiegel
closed
1 year ago
0
Report Overview and Tasks: Initial full draft
#35
HenrikSpiegel
closed
1 year ago
0
Extract Large samples.
#34
HenrikSpiegel
closed
1 year ago
2
MAGinator: Cherry pick catalogues
#33
HenrikSpiegel
closed
1 year ago
1
MAGinator diagnostics: Saturation curve
#32
HenrikSpiegel
closed
1 year ago
0
MAGinator Diagnostics
#31
HenrikSpiegel
opened
2 years ago
2
Add map-quantification back in
#30
HenrikSpiegel
closed
1 year ago
0
Add outlier detection for counts
#29
HenrikSpiegel
closed
1 year ago
0
Pipeline set data working_directories
#28
HenrikSpiegel
opened
2 years ago
0
MAGinator running
#27
HenrikSpiegel
closed
1 year ago
1
MAGinator inputfiles
#26
HenrikSpiegel
closed
1 year ago
1
Module: BGC family builder (clustering)
#25
HenrikSpiegel
closed
1 year ago
0
Update catalogue assembler to downsample to 1500 kmers per family.
#24
HenrikSpiegel
closed
2 years ago
0
Pipeline_base add functionality to rerun downstream if upstream is run.
#23
HenrikSpiegel
closed
2 years ago
0
Update kmer counter
#22
HenrikSpiegel
closed
2 years ago
1
Comparisons of BGC
#21
HenrikSpiegel
closed
2 years ago
0
Comparison of BGC
#20
HenrikSpiegel
closed
2 years ago
2
Pipeline class:
#19
HenrikSpiegel
closed
2 years ago
0
Update 02 distribution visualizer.
#18
HenrikSpiegel
closed
1 year ago
0
Genome synthesizer - Test error rate of ART-mbarc
#17
HenrikSpiegel
opened
2 years ago
1
POC: KmerCatalogueBuilder
#16
HenrikSpiegel
closed
2 years ago
0
Add 'auto' functionality to KmerQuantification readlength
#15
HenrikSpiegel
closed
2 years ago
1
Summary of experiments regarding simulation and kmers -> Understand simulation better.
#14
HenrikSpiegel
opened
2 years ago
7
Further investigations into Kmer quantification
#13
HenrikSpiegel
closed
2 years ago
5
Overall workings of kmer selector/refiner
#12
HenrikSpiegel
opened
2 years ago
0
Design module for generating initial kmer set for BGC-family
#11
HenrikSpiegel
closed
2 years ago
1
Redesign pipeline to allow multiple samples
#10
HenrikSpiegel
closed
2 years ago
2
Update QuantifierMap with following requirements.
#9
HenrikSpiegel
closed
2 years ago
0
Use parameters from fitted NegBinom instead of simple median.
#8
HenrikSpiegel
closed
2 years ago
1
Add catalogue generation to pipeline.
#7
HenrikSpiegel
closed
2 years ago
1
Pairwise alignment: Take into account lenght differences
#6
HenrikSpiegel
closed
2 years ago
2
Setup a config file
#5
HenrikSpiegel
closed
2 years ago
3
Setup KMER quantifier
#4
HenrikSpiegel
closed
2 years ago
7
Seperate downstream analysis from datageneration for simulate_x_gb
#3
HenrikSpiegel
closed
2 years ago
1
Quality Control of input reads
#2
HenrikSpiegel
closed
2 years ago
1
Reference Quantification
#1
HenrikSpiegel
closed
2 years ago
0