Open JlvtNicolas opened 5 months ago
Hi sure, the easiest way to batch process is creating a Macro to run through all files in a folder. This is an example:
// Get path to temp directory dir = "D:\!!!ADD PATH!!!"; print("\Clear"); savedir = "D:\!!!ADD Path!!!";
list = getFileList(dir); setBatchMode(true); for (i = 0; i < lengthOf(list); i++) { // for (i = 0; i < 1; i++) { if (endsWith(list[i], ".nd2")){ print("---------------------"); print(list[i]); print("---------------------"); run("Bio-Formats Windowless Importer", "open=["+dir+"\"+list[i]+"]"); run("eSRRF - Analysis", "magnification=5 radius=1.50 sensitivity=3 #=100 vibration avg wide-field #_0=25 axial=400");
selectWindow(list[i]+" - eSRRF (AVG)");
saveAs("Tiff", savedir+"//"+list[i]+" - eSRRF (AVG)"+".tif");
//selectWindow(list[i]+" - eSRRF (STD)");
//saveAs("Tiff", savedir+"//"+list[i]+" - eSRRF (STD)"+".tif");
selectWindow(list[i]+" - interpolated image");
saveAs("Tiff", savedir+"//"+list[i]+" - interpolated image"+".tif");
run("Close All");
}
}
setBatchMode(false); print("-----------------"); print("All done.");
Let me know if you need more support. Best, Hannah
Hi
I was wondering if there is a way to process batch analysis (aka: opening several stacks of images, and run the plugin to analyse all the stack one-by-one without re-lunch the analysis)?
bet regards
NJ