HenriquesLab / ZeroCostDL4Mic

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
MIT License
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StarDist 2D- Encountering error while exporting the model to BioImage Model Zoo format #264

Closed monbsi closed 1 year ago

monbsi commented 1 year ago

Hello, Thanks for developing the StarDist 2D module for segmentation. I was able to successfully create a preliminary model from scratch in StarDist 2d. However, while trying to export the trained model in BioImage Model Zoo format such that the model could be used in Fiji software, I am encountering an error while executing section 5.3 of StarDist 2D. Screenshot of the error is attached herewith image Please if you could help me execute the final step such I can integrate the model in Fiji software and process the my data. Screenshot of the other warning sign that I am encountering are attached herewith: image

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esgomezm commented 1 year ago

Hi!

We have just fixed it. Could you please try it now? I will close the issue. Please, reopen it if it does not work for you :)

thank you!