2D Stardist keeps crashing when Generating prediction(s) from unseen dataset

HenriquesLab / ZeroCostDL4Mic

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

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2D Stardist keeps crashing when Generating prediction(s) from unseen dataset #265

Open GiuseppeCiccone96 opened 1 year ago

GiuseppeCiccone96 commented 1 year ago

Describe the bug:

2D Stardist keeps crashing when Generating prediction(s) from unseen dataset. The unseen dataset is a stack of 301 images, each image is 16 bit and about 4MB. Upon crashing, the suggestion is to upgrade to Colab pro to have more RAM. Is there a solution to this, without having to upgrade and pay?

Desktop (please complete the following information):

OS: macOS Monterey 12.1
Browser: Safari
Version: 15.3

Thanks in advance,

Giuseppe

guijacquemet commented 1 year ago

Hi,

Can you divide your stack into smaller chunk(s)? So that the analysis fits into your available RAM?

Cheers

Guillaume