HenriquesLab / ZeroCostDL4Mic

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
MIT License
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installation fails in Stardist 3D #281

Closed pawlowska closed 7 months ago

pawlowska commented 1 year ago

The first block, "Install Stardist and dependencies" fails in Stardist_3D notebook.

Installation works if the version number is removed from the line: !pip install -q stardist==0.6.2

================================================================================ ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 69.8/69.8 kB 2.0 MB/s eta 0:00:00 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 450.7/450.7 kB 7.7 MB/s eta 0:00:00 error: subprocess-exited-with-error

× pip subprocess to install build dependencies did not run successfully. │ exit code: 1 ╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip. Installing build dependencies ... error error: subprocess-exited-with-error

× pip subprocess to install build dependencies did not run successfully. │ exit code: 1 ╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip. ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 136.8/136.8 kB 2.2 MB/s eta 0:00:00 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 941.9/941.9 kB 38.7 MB/s eta 0:00:00 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 191.9/191.9 kB 22.7 MB/s eta 0:00:00 Preparing metadata (setup.py) ... done ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 70.6/70.6 kB 7.9 MB/s eta 0:00:00 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 78.7/78.7 kB 9.3 MB/s eta 0:00:00 Building wheel for reikna (setup.py) ... done Preparing metadata (setup.py) ... done Building wheel for wget (setup.py) ... done ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 173.1/173.1 kB 2.2 MB/s eta 0:00:00

jinxsfe commented 1 year ago

I meet the same issue

esgomezm commented 7 months ago

Hi @pawlowska

Were you still able to train the model? Please, reopen the issue if you encounter more problems.