HenriquesLab / ZeroCostDL4Mic

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
MIT License
553 stars 129 forks source link

Fail in installing StarDist_3D_ZeroCostDL4Mic on GoogleColab #299

Closed peggyscshu closed 7 months ago

peggyscshu commented 10 months ago

Describe the bug Fail in installing StarDist_3D_ZeroCostDL4Mic on GoogleColab

To Reproduce Steps to reproduce the behavior:

  1. Save "StarDist_3D_ZeroCostDL4Mic.ipynb" as a copy with my Google account.
  2. Click on the button 'Play' of the section "1.1. Install StarDist."
  3. Wait for couple minutes.
  4. See the following error ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 69.8/69.8 kB 2.6 MB/s eta 0:00:00 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 450.7/450.7 kB 5.2 MB/s eta 0:00:00 error: subprocess-exited-with-error

    × pip subprocess to install build dependencies did not run successfully. │ exit code: 1 ╰─> See above for output.

    note: This error originates from a subprocess, and is likely not a problem with pip. Installing build dependencies ... error error: subprocess-exited-with-error

× pip subprocess to install build dependencies did not run successfully. │ exit code: 1 ╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip. ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 136.8/136.8 kB 2.7 MB/s eta 0:00:00 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 941.9/941.9 kB 10.2 MB/s eta 0:00:00 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 191.9/191.9 kB 10.4 MB/s eta 0:00:00 Preparing metadata (setup.py) ... done ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 70.6/70.6 kB 9.9 MB/s eta 0:00:00 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 78.7/78.7 kB 10.5 MB/s eta 0:00:00 Building wheel for reikna (setup.py) ... done Preparing metadata (setup.py) ... done Building wheel for wget (setup.py) ... done ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 187.1/187.1 kB 2.9 MB/s eta 0:00:00

Expected behavior A clear and concise description of what you expected to happen.

Screenshots image

Desktop (please complete the following information):

Additional context Add any other context about the problem here.

esgomezm commented 7 months ago

Hi @peggyscshu

We have updated the notebooks recently. Does this error persist? Also, the notebook should still work, are you able to train the model and use StarDist?

I'm closing the issue but if the problem is still there, do not hesitate opening it again. Thank you Esti