Describe the bug
Hi, I am trying out CARE 2D and am stuck at cell section 4.1. When I run it, this error pops up:
!! WARNING: Model folder already exists and has been removed !!
==================================================================
9 raw images x 1 transformations = 9 images
9 images x 50 patches per image = 450 patches in total
==================================================================
Input data:
/content: target='/content/gdrive/MyDrive/CARE2D/CARE_imagepairs/High_NA', sources=['/content/gdrive/MyDrive/CARE2D/CARE_imagepairs/Low_NA'], axes='CYX', pattern='*.tif*'
==================================================================
Transformations:
1 x Identity
==================================================================
Patch size:
64 x 64
==================================================================
0%| | 0/9 [00:00<?, ?it/s]
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
[<ipython-input-15-7ac281c24ca7>](https://localhost:8080/#) in <cell line: 33>()
31 pattern='*.tif*')
32
---> 33 X, Y, XY_axes = data.create_patches(
34 raw_data,
35 patch_filter=None,
2 frames
[/usr/local/lib/python3.10/dist-packages/csbdeep/data/generate.py](https://localhost:8080/#) in create_patches(raw_data, patch_size, n_patches_per_image, patch_axes, save_file, transforms, patch_filter, normalization, shuffle, verbose)
344 channel is None or patch_size[channel]==x.shape[channel] or _raise(ValueError('extracted patches must contain all channels.'))
345
--> 346 _Y,_X = sample_patches_from_multiple_stacks((y,x), patch_size, n_patches_per_image, mask, patch_filter)
347
348 s = slice(i*n_patches_per_image,(i+1)*n_patches_per_image)
[/usr/local/lib/python3.10/dist-packages/csbdeep/data/generate.py](https://localhost:8080/#) in sample_patches_from_multiple_stacks(datas, patch_size, n_samples, datas_mask, patch_filter, verbose)
79
80 if patch_filter is None:
---> 81 patch_mask = np.ones(datas[0].shape,dtype=np.bool)
82 else:
83 patch_mask = patch_filter(datas, patch_size)
[/usr/local/lib/python3.10/dist-packages/numpy/__init__.py](https://localhost:8080/#) in __getattr__(attr)
317
318 if attr in __former_attrs__:
--> 319 raise AttributeError(__former_attrs__[attr])
320
321 if attr == 'testing':
AttributeError: module 'numpy' has no attribute 'bool'.
`np.bool` was a deprecated alias for the builtin `bool`. To avoid this error in existing code, use `bool` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.bool_` here.
The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
Describe the bug Hi, I am trying out CARE 2D and am stuck at cell section 4.1. When I run it, this error pops up:
Hope you can help.
Best wishes, Kaarjel