R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identify specificity groups in the T cell receptor repertoire based on local (motif sharing) and global (hamming distance) similarities.
Thank you for sharing your work. It is a well established R package.
When I use it, I notice some problem in gliph2 function. when in some kind of input format, there will be a simpleError .
this might because in the gliph function there is potential hazard showed below
if there is only one column in cdr3_sequences which sequences do not have, the sequences will add the new column but with the header
cdr3_sequences[, !(base::colnames(cdr3_sequences) %in% base::colnames(sequences))], this may cause the simpleError mentioned above.
Thank you for sharing your work. It is a well established R package. When I use it, I notice some problem in gliph2 function. when in some kind of input format, there will be a simpleError .
this might because in the gliph function there is potential hazard showed below
if there is only one column in cdr3_sequences which sequences do not have, the sequences will add the new column but with the header cdr3_sequences[, !(base::colnames(cdr3_sequences) %in% base::colnames(sequences))], this may cause the simpleError mentioned above.