Hi, to all
I recently installed HiFiLES on Ubuntu(64 bit) but encountered a problem. I have edited my configure_run.sh and do this on the terminal:
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
<<< Configuring library with Metis support >>>
checking for thread local storage (TLS) class... __thread
checking for /usr/local/include/mpi.h... yes
checking for /usr/lib/atlas-base/libcblas.a... yes
checking for /usr/lib/atlas-base/libatlas.a... yes
checking whether we are using the GNU C++ compiler... yes
checking whether /usr/local/bin/mpicxx accepts -g... yes
checking dependency style of /usr/local/bin/mpicxx... gcc3
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) gcc3
checking whether gcc and cc understand -c and -o together... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... /usr/local/bin/mpicxx -E
checking for ld used by /usr/local/bin/mpicxx... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the /usr/local/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for /usr/local/bin/mpicxx option to produce PIC... -fPIC -DPIC
checking if /usr/local/bin/mpicxx PIC flag -fPIC -DPIC works... yes
checking if /usr/local/bin/mpicxx static flag -static works... yes
checking if /usr/local/bin/mpicxx supports -c -o file.o... yes
checking if /usr/local/bin/mpicxx supports -c -o file.o... (cached) yes
checking whether the /usr/local/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
configure: creating ./config.status
config.status: creating lib/parmetis-4.0.2/Makefile
config.status: creating lib/parmetis-4.0.2/metis/Makefile
config.status: creating Makefile
config.status: creating lib/Makefile
config.status: creating obj/Makefile
config.status: executing depfiles commands
config.status: executing libtool commands
Additionally, don't forget to set the environment variable HIFILES_HOME
Everything looks normal. But when I proceed to the next step: make command, it will outputs like this:
src/geometry.cpp: In function ‘void repartition_mesh(int&, array&, array&, array&, array&, solution)’:
src/geometry.cpp:2275:13: error: cannot convert ‘int’ to ‘idx_t {aka long int}’ for argument ‘1’ to ‘int ParMETIS_V3_PartMeshKway(idx_t, idx_t, idx_t, idx_t, idx_t, idx_t, idx_t, idx_t, idx_t, real_t, real_t, idx_t, idx_t, idx_t, MPI_Comm*)’
&comm);
^
Makefile:174: recipe for target 'obj/geometry.o' failed
make: *** [obj/geometry.o] Error 1
I also try the command make -i. In addition to geometry.cpp, all cpp files are normal. I don't know how to eliminate this error. Any help would be appreciate, thanks!
Hi, to all I recently installed HiFiLES on Ubuntu(64 bit) but encountered a problem. I have edited my configure_run.sh and do this on the terminal:
checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 <<< Configuring library with Metis support >>> checking for thread local storage (TLS) class... __thread checking for /usr/local/include/mpi.h... yes checking for /usr/lib/atlas-base/libcblas.a... yes checking for /usr/lib/atlas-base/libatlas.a... yes checking whether we are using the GNU C++ compiler... yes checking whether /usr/local/bin/mpicxx accepts -g... yes checking dependency style of /usr/local/bin/mpicxx... gcc3 checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking whether gcc and cc understand -c and -o together... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... /usr/local/bin/mpicxx -E checking for ld used by /usr/local/bin/mpicxx... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the /usr/local/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for /usr/local/bin/mpicxx option to produce PIC... -fPIC -DPIC checking if /usr/local/bin/mpicxx PIC flag -fPIC -DPIC works... yes checking if /usr/local/bin/mpicxx static flag -static works... yes checking if /usr/local/bin/mpicxx supports -c -o file.o... yes checking if /usr/local/bin/mpicxx supports -c -o file.o... (cached) yes checking whether the /usr/local/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: creating ./config.status config.status: creating lib/parmetis-4.0.2/Makefile config.status: creating lib/parmetis-4.0.2/metis/Makefile config.status: creating Makefile config.status: creating lib/Makefile config.status: creating obj/Makefile config.status: executing depfiles commands config.status: executing libtool commands
Build Configuration Summary:
Additionally, don't forget to set the environment variable HIFILES_HOME
Everything looks normal. But when I proceed to the next step: make command, it will outputs like this:
src/geometry.cpp: In function ‘void repartition_mesh(int&, array&, array&, array&, array&, solution)’:
src/geometry.cpp:2275:13: error: cannot convert ‘int’ to ‘idx_t {aka long int}’ for argument ‘1’ to ‘int ParMETIS_V3_PartMeshKway(idx_t, idx_t, idx_t, idx_t, idx_t, idx_t, idx_t, idx_t, idx_t, real_t, real_t, idx_t, idx_t, idx_t, MPI_Comm*)’
&comm);
^
Makefile:174: recipe for target 'obj/geometry.o' failed
make: *** [obj/geometry.o] Error 1
I also try the command make -i. In addition to geometry.cpp, all cpp files are normal. I don't know how to eliminate this error. Any help would be appreciate, thanks!
Best