resampling of pancreas data

HiLab-git / SSL4MIS

Semi Supervised Learning for Medical Image Segmentation, a collection of literature reviews and code implementations.

MIT License

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resampling of pancreas data #19

Closed Huiimin5 closed 3 years ago

Huiimin5 commented 3 years ago

Thank you a lot for releasing the code. Could you please also specify how to resample pancreas images to a resolution of 1.01.01.0mm?

As we can see from the meta-info, the SliceThickness is missing from Pancreas dataset. In that case, how do you sample over Z-axis? By the way, Is it possible to release the data preprocessing of Pancreas-CT dataset too?

Luoxd1996 commented 3 years ago

Hi, Sorry, in this repo, we don't use Pancreas-CT as an example. For resampling processing, you need to learn how to use SimpleITK, which is very basic knowledge for medical image processing. Best, Xiangde.

Huiimin5 commented 3 years ago

Got it. By the way, did you center crop around ground truth over 3 dimension or 2 dimensions (x and y) like what has been done in UA-MT?