gregorgorjanc
commented
1 year ago Maybe use the wording "few minutes";)
With regards!
University of Edinburgh Gregor Gorjanc, PhD
The Roslin Institute Group leader & Royal Society Fellow
Easter Bush twitter: @GregorGorjanc
EH25 9RG mail: gregor.gorjanc roslin.ed.ac.uk
Scotland, UK web: www.ed.ac.uk/roslin/highlanderlab
On Tue, Nov 15, 2022 at 10:24:10, LStrachan @.***> wrote:
@.**** commented on this pull request.
In vignettes/A_Honeybee_biology.Rmd https://github.com/HighlanderLab/SIMplyBee/pull/455#discussion_r1022609094 :
founderGenomes <- quickHaplo(nInd = 2, nChr = 3, segSites = 100)-Now we are ready to setup global simulation parameters using
SimParamBee. -SimParamBeeenables the user to tweak many simulation settings, which you can read -about in the help pages (help(SimParamBee)andhelp(SimParam)). Here we will -point out that we recommend saving this object with the nameSP. Namely, -all SIMplyBee functions will use this object, if you don't directly specify -simParamBeeargument. +Alternatively as a second demonstration, using SIMplyBee'ssimulateHoneybeeGenomes(), we will create a founder population containing the genomes of 4 A.m.mellifera (North) individuals and 2 A.m.carnica individuals. The genomes will be represented by only three chromosomes and 5 segregating sites per chromosome in this example. These numbers are of course extremely low but for demonstrative reasons we want a quick example. This chunk of code should take about 5 minutes to run.It's 5 mins of my laptop just now
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Edit to Genomics and HoneyBee biology vignettes