Closed JerBub closed 8 months ago
@JerBub I think you have switched off csd in too many places - here is the error message from the R CMD check
R CMD check
══ Failed tests ════════════════════════════════════════════════════════════════ [211](https://github.com/HighlanderLab/SIMplyBee/actions/runs/7286192573/job/19854453954?pr=563#step:5:213) ── Error ('test-L0_auxiliary_functions.R:15:3'): nCaste ──────────────────────── [212](https://github.com/HighlanderLab/SIMplyBee/actions/runs/7286192573/job/19854453954?pr=563#step:5:214) Error in `quickHaplo(nInd = 5, nChr = 1, segSites = 100, csdChr = NULL)`: unused argument (csdChr = NULL) [213](https://github.com/HighlanderLab/SIMplyBee/actions/runs/7286192573/job/19854453954?pr=563#step:5:215) ── Error ('test-L0_auxiliary_functions.R:765:4'): isGenoHeterozygous ─────────── [214](https://github.com/HighlanderLab/SIMplyBee/actions/runs/7286192573/job/19854453954?pr=563#step:5:216) Error in `getCsdGeno(getQueen(colony, simParamBee = SP), simParamBee = SP)`: The csd locus has not been set! [215](https://github.com/HighlanderLab/SIMplyBee/actions/runs/7286192573/job/19854453954?pr=563#step:5:217) Backtrace: [216](https://github.com/HighlanderLab/SIMplyBee/actions/runs/7286192573/job/19854453954?pr=563#step:5:218) ▆ [217](https://github.com/HighlanderLab/SIMplyBee/actions/runs/7286192573/job/19854453954?pr=563#step:5:219) 1. └─SIMplyBee::getCsdGeno(getQueen(colony, simParamBee = SP), simParamBee = SP) at test-L0_auxiliary_functions.R:765:4
Please ensure that csd is available for tests where we are testing functionality related to csd
Fixed to merge this in.
@JerBub I think you have switched off csd in too many places - here is the error message from the
R CMD check
Please ensure that csd is available for tests where we are testing functionality related to csd