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HighlanderLab / jbancic_alphasimr_plants

Plant breeding simulations with AlphaSimR
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Inbreeding measurement #19

Open GopalaKGuddanti opened 2 months ago

GopalaKGuddanti commented 2 months ago

I am testing different breeding strategies (mass selection, pedigree, genomic selection), and I would like to obtain inbreeding levels for each selection round and genetic gain. I am new to using AlphaSimR and practising examples in Git Hub. I could not find a function in AlphaSimR that gives me an inbreeding level. Please suggest me.

gregorgorjanc commented 2 months ago

Hi @GopalaKGuddanti you can use whatever software you are used to (either based on pedigree or genomic data) to get inbreeding quantification. A simple approach is also to track homozygosity / heterozygosity in the genome.