Closed janaobsteter closed 9 months ago
This was fixed in the split.smk by listing files that start with either Chr or chr, but in the Snakefile we make a list named chromosomes where we define if it's either chr or Chr (so can't be both or we need to fix it in the Snakefile)
Chr
chr,
Snakefile
chromosomes
chr
This was specific to Gabriela's dataset and will be handled by changing how we handle chromosome names
This was fixed in the split.smk by listing files that start with either
Chr
orchr,
but in theSnakefile
we make a list namedchromosomes
where we define if it's eitherchr
orChr
(so can't be both or we need to fix it in the Snakefile)