How to handle files named Chr or chr

HighlanderLab / tree_seq_pipeline

Pipeline to infer tree sequences with different datasets

MIT License

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How to handle files named Chr or chr #44

Closed janaobsteter closed 9 months ago

janaobsteter commented 10 months ago

This was fixed in the split.smk by listing files that start with either Chr or chr, but in the Snakefile we make a list named chromosomes where we define if it's either chr or Chr (so can't be both or we need to fix it in the Snakefile)

janaobsteter commented 9 months ago

This was specific to Gabriela's dataset and will be handled by changing how we handle chromosome names