Closed janaobsteter closed 9 months ago
Also, I think it would be good to have the tsinfer params in a config file rather than in a script file. I just opened #68 about this.
Added recommendations to README.md in PR #69 . Everyone can set up their own config file and specify on the command line via --configfile myFile.yaml
. beetest.yaml
can be used as a template.
Config files need not be hard coded into the Snakefile. They can be specified on the commandline with
--configfile
, see https://snakemake.readthedocs.io/en/stable/snakefiles/configuration.html. So, everybody can make their specific config files and leave them untracked.Happy to add this to the readme.