Some rules duplicate vcf files

HighlanderLab / tree_seq_pipeline

Pipeline to infer tree sequences with different datasets

MIT License

3 stars 7 forks source link

Closed janaobsteter closed 9 months ago

janaobsteter commented 10 months ago

Some rules (like rename in merge_samples_vcf.smk and rename_phased in phase.smk) duplicate the file which is inefficient

janaobsteter commented 10 months ago

This was solved by using sim links - but they are not in the main yet (my fork)