Open gregorgorjanc opened 1 year ago
Yes, we should also export the environments that are used by the pipeline, like conda list -n myCoustomEnv --explicit > myCoustomEnv.txt
. Can then save these inside the repo. For this one would have to go through the rules and see which ends are used.
We should write how to install all the required software, including snakemake, Python, phasing, mamba/conda environments with tsinfer, ... all versioned
For example, I ran this on my Mac to install some snakemake version