output redirection produces empty bed file

Hikoyu / FATE

Framework for Annotating Translatable Exons

MIT License

5 stars 1 forks source link

output redirection produces empty bed file #4

Open hirozoan opened 4 years ago

hirozoan commented 4 years ago

Hi, I was running FATE following the manual using: fate.pl search -h blastn -g genewise genome.fa in.fa >out.bed. There were fate_search_blastn.out, nucl, and prot. However, out.bed was empty. I would be really grateful if you could help this problem.

Hikoyu commented 4 years ago

Hi, @hirozoan. Sorry, I don't follow you. Are the BLASTN and GeneWise working properly? (Any error messages were not shown?) Otherwise, please check the query nucleotide sequences are started by methionin (or in-frame codon).