doesn't install

[raw937]

dextract.c:23:18: fatal error: hdf5.h: No such file or directory

include

              ^

compilation terminated. make: [dextract] Error 1 make: Waiting for unfinished jobs.... ./utils/build.sh: line 19: cmake: command not found make: No targets specified and no makefile found. Stop. make: No rule to make target `install'. Stop.

[govinda-kamath]

You need to install the HDF5 library, as the pacbio data is often released as h5 files. We use Dextractor to extract sequences from these files. If you're on ubuntu, the following should do the trick (though installing all the packages may not be necessary.).

sudo apt-get install hdf5-tools
sudo apt-get install libhdf5-dev
sudo apt-get install libhdf5-mpi-dev

[fxia22]

Also you need to install cmake. See this for more information

[govinda-kamath]

Were you able to fix this @raw937 ?

[raw937]

Nope I have never gotten it to install or work.

Cheers Rick

On Mon, Aug 21, 2017 at 10:25 PM, Govinda Kamath notifications@github.com wrote:

Were you able to fix this @raw937 https://github.com/raw937 ?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/HingeAssembler/HINGE/issues/114#issuecomment-323915770, or mute the thread https://github.com/notifications/unsubscribe-auth/ALWiqCUpMgbebndY3ppuNvWAf2QbGHllks5salhHgaJpZM4NvRog .

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[govinda-kamath]

Let us know if you are having any specific issues we can help with.

[raw937]

It's doesn't install or work.

On Aug 22, 2017 11:56 PM, "Govinda Kamath" notifications@github.com wrote:

Let us know if you are having any specific issues we can help with.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/HingeAssembler/HINGE/issues/114#issuecomment-324229106, or mute the thread https://github.com/notifications/unsubscribe-auth/ALWiqHh3672pWSU9Ra7hA4bhkbOitvU4ks5sa78CgaJpZM4NvRog .

[govinda-kamath]

Well it looks like you did not follow the installation instructions detailed here.

(And there is no way it can work if you do not install it)