DAMASKER and DASCRUBBER integration

HingeAssembler / HINGE

Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"

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Closed mictadlo closed 7 years ago

mictadlo commented 7 years ago

Hi, Do you have any examples how it would be possible to integrate DAMASKER and DASCRUBBER?

Thank you in advance.

Michal

govinda-kamath commented 7 years ago

This provides an example of using DASCRUBBER.

You would need to set the

[filter]
use_qv = true;

in the filter part of the .ini file you pass in as well.

I do not see how we could use DAMASKER as we do attempt to resolve all repeats that are resolvable from the data.