HingeAssembler / HINGE

Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
http://genome.cshlp.org/content/27/5/747.full.pdf+html?sid=39918b0d-7a7d-4a12-b720-9238834902fd
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hinge draft always outputs blank line and runs for a long time #142

Open nottwy opened 6 years ago

nottwy commented 6 years ago

Hi,

Now I'm running 'hinge draft'. But it runs too slowly. Another problem is the program always output blank symbol. The final output of problem is :


add data add data


Id there any suggestion from you?

Thanks

govinda-kamath commented 6 years ago

It should create a ecoli.draft.fasta like file (where ecoli.draft is what you give to the --out option). Is it not creating that?

nottwy commented 6 years ago

Of course there is the file draft.fasta. But it's empty. And the program runs for a long time and nothing is outputted.

SchwarzEM commented 6 years ago

I've had a similar-sounding problem, about which I'll post in detail separately.