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HingeAssembler / HINGE

Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
http://genome.cshlp.org/content/27/5/747.full.pdf+html?sid=39918b0d-7a7d-4a12-b720-9238834902fd
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DASqv #143

Closed mictadlo closed 6 years ago

mictadlo commented 6 years ago

Hi, is it enough to run only DASqv command or do I have to run all other commands from dascrubber package?

Thank you in advance

Michal

govinda-kamath commented 6 years ago

DASqv is all we use. We use it to filter out chimeric reads. You could also run it without DASqv by setting use_qv = false in the .ini file you pass in.

mictadlo commented 6 years ago

did use catrack command to add it to the database?

govinda-kamath commented 6 years ago

No we don't. We act on the .qual directly.