govinda-kamath
commented
6 years ago We don’t need either in general. Racon is useful if one is assembling nanopore. We wanted to use minimap as an alternative to daligner. On Tue, Feb 20, 2018 at 12:22 PM, Erich Schwarz notifications@github.com wrote:
The setup script for HINGE (invoked by "source utils/setup.sh") tries to put both thirdparty/racon/bin and thirdparty/racon/tools/minimap into $PATH. However, in my hands, compilation of HINGE yields neither of these modules in the thirdparty directory.
Does the current version of HINGE actually require either racon or or minimap? If it does, then should I install them separately, then edit utils/setup.sh so that it adds them to $PATH?
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The setup script for HINGE (invoked by "source utils/setup.sh") tries to put both thirdparty/racon/bin and thirdparty/racon/tools/minimap into $PATH. However, in my hands, compilation of HINGE yields neither of these modules in the thirdparty directory.
Does the current version of HINGE actually require either racon or or minimap? If it does, then should I install them separately, then edit utils/setup.sh so that it adds them to $PATH?