Open jsimba-99 opened 3 years ago
It should work if you change to seq += l.decode('ascii').strip()
or seq += l.decode('utf-8').strip()
.
Thanks, it worked apparently
My line now shows this error:
draft assembly
Traceback (most recent call last):
File "/HINGE//inst/bin/../lib/hinge/get_draft_path.py", line 109, in
Any idea about this?
Many thanks @fxia22
Cheers,
Hi, running hinge to assemble the chloroplast genome (~156kb) of a plant species after install and set up all the dependencies and scripts I got the following error:
draft assembly Traceback (most recent call last): File "/HINGE//inst/bin/../lib/hinge/get_draft_path.py", line 77, in
for read_id,read in zip(reads,reads_queried):
File "/HINGE/inst/lib/hinge/parse_read.py", line 21, in parse_read
seq += l.strip()
TypeError: must be str, not bytes
Everything seemed it was working up to this point
I don't how to solve this error and would appreciate any help
Cheers,