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HingeAssembler / HINGE

Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
http://genome.cshlp.org/content/27/5/747.full.pdf+html?sid=39918b0d-7a7d-4a12-b720-9238834902fd
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Reorganize executables to be subcommands of a single program #78

Closed 0xaf1f closed 8 years ago

0xaf1f commented 8 years ago

I was working on Debian packaging for HINGE, but since there are many diverse commands with generic names, I thought it would be helpful to have a master executable hinge, where you can call things like hinge filter and so forth. It needs just a bit more work, which I can't do without better understanding of the internal components. I noticed the examples have slightly different steps and it's not clear to me what some of the commands do or whether all of them should be wrapped by the hinge master program.

I'd appreciate your consideration of these changes and if you could help finalize it. I'm definitely open to suggestions as well.

fxia22 commented 8 years ago

@afif-elghraoui Great work, thank you so much. We really appreciate that!

0xaf1f commented 8 years ago

Thanks! Will you be incorporating additional commands like those from the Analysis of Results section of the README?

If you don't mind, would you also tag a new release that includes these changes so I can target it for the Debian package?

fxia22 commented 8 years ago

@afif-elghraoui yes, we will be working on additional commands, as well as the demos and new release.