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Hintzelab / MABE

Modular Agent Based Evolution Framework
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MQ paths are wrong #122

Open JorySchossau opened 6 years ago

JorySchossau commented 6 years ago

when referencing alternative paths, MQ should replace relative paths with absolute paths to the current directory: "../settings.cfg -> settings.cfg" because that's how they are copied.

JorySchossau commented 6 years ago

Conversation w/ Cliff -> Localize MABE dir and no copying would be necessary.

cliff-bohm commented 6 years ago

Is this a good topic for next weeks MABE meeting?

On Thu, Feb 1, 2018 at 3:27 PM, Jory Schossau notifications@github.com wrote:

Conversation w/ Cliff -> Localize MABE dir and no copying would be necessary.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/Hintzelab/MABE/issues/122#issuecomment-362391566, or mute the thread https://github.com/notifications/unsubscribe-auth/AG78enZ_ww_AwZlR-H62rFdw0-9DnoQIks5tQh40gaJpZM4R2M3u .

-- Cliff Bohm - Evolving Systems Technologist BEACON Center for the Study of Evolution in Action Michigan State University

JorySchossau commented 6 years ago

Yes, as there were arguments against each decision.

On Fri, Feb 2, 2018 at 9:02 AM, Clifford Bohm notifications@github.com wrote:

Is this a good topic for next weeks MABE meeting?

On Thu, Feb 1, 2018 at 3:27 PM, Jory Schossau notifications@github.com wrote:

Conversation w/ Cliff -> Localize MABE dir and no copying would be necessary.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/Hintzelab/MABE/issues/122#issuecomment-362391566, or mute the thread https://github.com/notifications/unsubscribe-auth/AG78enZ_ww_AwZlR- H62rFdw0-9DnoQIks5tQh40gaJpZM4R2M3u .

-- Cliff Bohm - Evolving Systems Technologist BEACON Center for the Study of Evolution in Action Michigan State University

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/Hintzelab/MABE/issues/122#issuecomment-362594577, or mute the thread https://github.com/notifications/unsubscribe-auth/ACjbeXk9k6Dx-qm0u2tqXENY2ogOQLUYks5tQxWNgaJpZM4R2M3u .

JorySchossau commented 6 years ago

We decided on requiring all files specified must be at or below the same dir level as MABE the MQ call dir. When running on the HPCC the path to each file will be recreated (thus the earlier requirement) and if you need other files outside this requirement, then make it fit the requirement by using symlinks.

cgnitash commented 6 years ago

So this issue is resolved?

JorySchossau commented 6 years ago

The folder structure should be recreated on compute nodes for all files specified in MQ by user.