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HobnobMancer / cazy_webscraper

Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
https://hobnobmancer.github.io/cazy_webscraper/
MIT License
13 stars 3 forks source link

Add subcommands #118

Open HobnobMancer opened 9 months ago

HobnobMancer commented 9 months ago

Is your feature request related to a problem? Please describe.

A clear and concise description of what the problem is. E.g. I'm always frustrated when [...]

Atm each command in cazy_webscraper is a separate CL command and entry point, with it's own CLI. Simplify the use of cazy_webscraper and have one command cazy_webscraper with subcommands, i.e. one subcommand per task (e.g. downloading protein seqs from GenBank).

Describe the solution you'd like

Add subcommands to cazy_webscraper, as implemented in cazomvolve and pyani packages.

HobnobMancer commented 9 months ago

This will be a long term aim.

Work on this new feature will likely not start until Dec 2023-Jan 2024