issues
search
Hogfeldt
/
ctDNAtool
A software for creating and manipulating statistics from cfDNA data
4
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Extends documentation for stride_binning
#42
EliasRosendahl
closed
3 years ago
0
fix stride_binning
#41
EliasRosendahl
closed
3 years ago
0
Refactor using sys.path
#40
EliasRosendahl
opened
3 years ago
0
Exposes BAM class in generators
#39
EliasRosendahl
closed
3 years ago
0
Adds length_end_seq_marginal manipulator
#38
EliasRosendahl
closed
3 years ago
0
Handle N column in summaries_data()
#37
EliasRosendahl
opened
3 years ago
0
ctDNAtool documentation
#36
EliasRosendahl
closed
3 years ago
0
moves file_of_files to cli_common
#35
EliasRosendahl
closed
3 years ago
0
Refactor cli_flow with file_of_files
#34
EliasRosendahl
closed
3 years ago
0
Docstrings for cli.py commands.
#33
EliasRosendahl
opened
3 years ago
0
Investigate why some .pickle files are truncated.
#32
EliasRosendahl
opened
3 years ago
0
Adds manipulator for combining data instances
#31
EliasRosendahl
closed
3 years ago
0
Creates manipulator for converting to tsv output.
#30
EliasRosendahl
closed
3 years ago
0
Added no print rule for flake8
#29
Hogfeldt
closed
3 years ago
0
Add logging
#28
Hogfeldt
closed
3 years ago
0
Adds cli_flow for workflow commands
#27
EliasRosendahl
closed
3 years ago
0
Eliminated frags with length 0
#26
Hogfeldt
closed
3 years ago
0
adds bin_genome_chromosome to cli
#25
EliasRosendahl
closed
3 years ago
0
Added option for binning genome in chromosomes
#24
Hogfeldt
closed
3 years ago
0
adds option for filtering autosome chromosomes when binning
#23
EliasRosendahl
closed
3 years ago
0
Added check to see if flank is out of chrom
#22
Hogfeldt
closed
3 years ago
0
Use template length instead of our own calc
#21
Hogfeldt
closed
3 years ago
0
Added a flag for setting match confidence
#20
Hogfeldt
closed
3 years ago
0
Filter out fragments with low match confidence
#19
EliasRosendahl
closed
3 years ago
0
Summaries manipulation refactor
#18
EliasRosendahl
opened
3 years ago
0
Manipulator for summing out an axis.
#17
EliasRosendahl
opened
3 years ago
0
fixed error in call to filter function
#16
Hogfeldt
closed
3 years ago
0
Mate length seq
#15
Hogfeldt
closed
3 years ago
0
In sample aggregation/collapse
#14
Hogfeldt
closed
4 years ago
0
Length end seqs generator added
#13
Hogfeldt
closed
4 years ago
0
Data abstraction
#12
Hogfeldt
closed
4 years ago
0
Data abstraction
#11
Hogfeldt
closed
4 years ago
0
Preprocess natural sort chromosome
#10
Hogfeldt
closed
4 years ago
0
Manipulation for aggregating all regions in a sample
#9
Hogfeldt
closed
4 years ago
1
Create a data abstraction
#8
Hogfeldt
closed
4 years ago
1
Preprocess genome binning create chr sorting
#7
Hogfeldt
closed
4 years ago
0
Added pytest to noxfile
#6
Hogfeldt
closed
4 years ago
0
Setup a test suite
#5
Hogfeldt
closed
4 years ago
1
Generator: Fragment lengths and end sequences
#4
Hogfeldt
closed
4 years ago
1
Add logging
#3
Hogfeldt
closed
3 years ago
2
Better file format for outputting data
#2
Hogfeldt
opened
4 years ago
1
Manipulation: binning, sliding window with stride parameter
#1
Hogfeldt
opened
4 years ago
3