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Hollenbach-lab / PING-legacy

Pushing Immunogenetics to the Next Generation
GNU General Public License v3.0
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running allele caller without 2DS1, 2DS2, and 3DP1 data output #6

Open hhenry555153tw opened 4 years ago

hhenry555153tw commented 4 years ago

I have run 48 cases of target enrichment sequencing of IHWG standard DNA and analyzed by PING. All cases output their KIR allele in allele caller except 2DS1, 2DS2, 3DP1. Although these samples have been approved of these genes existence in KFF results and MIRA results. In the script of PING_allele_caller, there is no loci caller of 2DS1, 2DS2, and 3DP1. But I found the reference of 2DS1, 2DS2 in resource directory of caller_resources. Does these version of PING can't make allele calling of these three genes?

jillahjillah commented 4 years ago

I’m sorry, that version of ping is no longer supported. We will be posting an updated version very shortly. Very sorry for the inconvenience. Jill

—————————————— Jill A. Hollenbach, PhD, MPH Associate Professor, Neurology UCSF Weill Institute for Neurosciences

On Jun 4, 2020, at 8:38 PM, hhenry555153tw notifications@github.com<mailto:notifications@github.com> wrote:

I have run 48 cases of target enrichment sequencing of IHWG standard DNA and analyzed by PING. All cases output their KIR allele in allele caller except 2DS1, 2DS2, 3DP1. Although these samples have been approved of these genes existence in KFF results and MIRA results. In the script of PING_allele_caller, there is no loci caller of 2DS1, 2DS2, and 3DP1. But I found the reference of 2DS1, 2DS2 in resource directory of caller_resources. Does these version of PING can't make allele calling of these three genes?

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hhenry555153tw commented 4 years ago

Thank you