Dockerize PING - Githubissues

Hollenbach-lab / PING

An R-based bioinformatic pipeline to determine killer-cell immunoglobulin-like receptor (KIR) copy number and high-resolution genotypes from short-read sequencing data.

MIT License

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Dockerize PING #2

Closed samhollenbach closed 3 years ago

samhollenbach commented 3 years ago

Initial attempt to Dockerize PING

Spin up supporting files
Move R packages to separate install file
Abstract hardcoded input variables to ENV variables

TODO:

Expose ENV vars as CLI args
Enable volume mounting for local file access (may be able to do already through Docker CLI)